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Series GSE178650 Query DataSets for GSE178650
Status Public on Jun 23, 2021
Title Mouse intestinal epithelial cells in the deficiency of Foxo1
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Mucus produced by goblet cells in the gastrointestinal (GI) tract forms a biological barrier that protects the intestine from invasion by commensals and pathogens. However, the host-derived regulatory network that controls mucus secretion and thereby changing gut microbiota has not been well studied. We found Forkhead box protein O1 (Foxo1) regulates mucus secretion by goblet cells and determines intestinal homeostasis. Loss of Foxo1 in intestinal epithelial cells (IECs) results in a defect in goblet cell autophagy and mucus secretion, leading to impaired gut microenvironment and dysbiosis.
 
Overall design RNA sequence of mouse intestinal epithelial cells from Foxo1flox and VilCre Foxo1flox mice
 
Contributor(s) Wu C
Citation(s) 34287641
Submission date Jun 22, 2021
Last update date Sep 22, 2021
Contact name Chuan Wu
Organization name National Cancer Institute
Street address 10 Center Drive, Building 10, RM 4B17
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM5395249 Foxo1flox_rep1
GSM5395250 Foxo1flox_rep2
GSM5395251 Foxo1flox_rep3
Relations
BioProject PRJNA739893
SRA SRP325027

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178650_RAW.tar 1010.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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