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Status |
Public on Jun 15, 2022 |
Title |
Population genomics of variegated toad-headed lizard Phrynocephalus versicolor and its adaptation to the colorful sand of the Gobi Desert |
Organism |
Phrynocephalus versicolor |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of melanic variation. The goals of this study are to evaluate population evolutionary genetics associated with dark and light color variation in a lizard.
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Overall design |
RNA for from different tisues of the ssmple female was extracted to generate a comprehensive transcriptome. Additionally 3 individuals from melanic population HSK were sequenced to be compared in differential expression analysis against non-melanic population GZ
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Contributor(s) |
Jin Y, Aguilar-Gómez D, Brandt DY, Nielsen R |
Citation(s) |
35679302 |
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Submission date |
Jun 28, 2021 |
Last update date |
Jun 22, 2022 |
Contact name |
Diana Aguilar Gomez |
E-mail(s) |
aguilar-gomez@berkeley.edu
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Organization name |
University of California Berkeley
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Department |
Center for Computational Biology
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Lab |
Nielsen lab
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Street address |
4th floor VLSB, University of California Berkeley
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City |
Berkeley |
State/province |
CA |
ZIP/Postal code |
94720-5901 |
Country |
USA |
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Platforms (1) |
GPL30325 |
Illumina NovaSeq 6000 (Phrynocephalus versicolor) |
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Samples (6)
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Relations |
BioProject |
PRJNA742052 |
SRA |
SRP325880 |