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Series GSE179069 Query DataSets for GSE179069
Status Public on Jun 15, 2022
Title Population genomics of variegated toad-headed lizard Phrynocephalus versicolor and its adaptation to the colorful sand of the Gobi Desert
Organism Phrynocephalus versicolor
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of melanic variation. The goals of this study are to evaluate population evolutionary genetics associated with dark and light color variation in a lizard.
 
Overall design RNA for from different tisues of the ssmple female was extracted to generate a comprehensive transcriptome. Additionally 3 individuals from melanic population HSK were sequenced to be compared in differential expression analysis against non-melanic population GZ
 
Contributor(s) Jin Y, Aguilar-Gómez D, Brandt DY, Nielsen R
Citation(s) 35679302
Submission date Jun 28, 2021
Last update date Jun 22, 2022
Contact name Diana Aguilar Gomez
E-mail(s) aguilar-gomez@berkeley.edu
Organization name University of California Berkeley
Department Center for Computational Biology
Lab Nielsen lab
Street address 4th floor VLSB, University of California Berkeley
City Berkeley
State/province CA
ZIP/Postal code 94720-5901
Country USA
 
Platforms (1)
GPL30325 Illumina NovaSeq 6000 (Phrynocephalus versicolor)
Samples (6)
GSM5404851 HSK19_dorsal skin
GSM5404852 HSK02_dorsal skin
GSM5404853 HSK07_dorsal skin
Relations
BioProject PRJNA742052
SRA SRP325880

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179069_Annotation_Summary.txt.gz 10.3 Mb (ftp)(http) TXT
GSE179069_GZvsHSK.Differential_analysis_results.txt.gz 5.6 Mb (ftp)(http) TXT
GSE179069_RAW.tar 8.2 Mb (http)(custom) TAR (of TXT)
GSE179069_cluster_all.fasta.gz 67.8 Mb (ftp)(http) FASTA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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