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Series GSE179202 Query DataSets for GSE179202
Status Public on Mar 02, 2022
Title Peroxisomes are dispensable for normal renal function.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Peroxisomes are highly abundant in proximal tubules where peroxisomal enzymes have been proposed to play an important role in a variety of metabolic and antioxidant functions. This hypothesis was supported by human genetic studies that identified mutations leading to peroxisomal biogenesis deficiency, resulting in severe multi-organ damage (Zellweger’s spectrum disorders (ZSD)), including renal impairment. However, the role of proximal tubule peroxisomes in renal (patho)physiology remains uninvestigated. We addressed this question in mice with conditional ablation of peroxisomal biogenesis in the renal tubule. Our results demonstrate that renal tubular peroxisomes are dispensable for normal renal function and suggest that renal damage in ZSD patients is of extrarenal origin.
 
Overall design Peroxisome biogenesis in the renal tubule was disrupted through conditional inactivation of Pex5 encoding cytosolic peroxisome targeting signal 1 (PTS1) receptor essential for import of PTS1 motif-containing proteins into peroxisomes. The Pex5 deletion in the renal tubule of adult mice was induced by 2-week treatment with DOX of 8-week-old Pex5lox/lox/Pax8-rtTA/LC1 male and female mice. In parallel, the same DOX treatment was provided to their littermate controls (Pex5lox/lox mice). All experiments on adult mice were performed 4 weeks after the end of DOX treatment.
 
Contributor(s) Ansermet C, Centeno G, Garcia A, Bignon Y, Pradervand S, Firsov D
Citation(s) 35191396
Submission date Jun 30, 2021
Last update date Mar 03, 2022
Contact name Sylvain Pradervand
E-mail(s) Sylvain.Pradervand@unil.ch
Phone +41 21 692 39 08
Organization name UNI Lausanne
Department CIG
Lab DNA Array Facility
Street address Genopode
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (24)
GSM5411434 Pex5_Ctrl_female_rep1
GSM5411435 Pex5_Ctrl_female_rep2
GSM5411436 Pex5_Ctrl_female_rep3
Relations
BioProject PRJNA742694
SRA SRP326314

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179202_RAW.tar 4.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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