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Series GSE17953 Query DataSets for GSE17953
Status Public on Feb 04, 2010
Title Transcriptomic analysis of maize developing earshoot, IBMRIL X IHP1 hybrid
Organism Zea mays
Experiment type Expression profiling by array
Summary Maize earshoot is a metabolic sink espcially related to nitrogen metabolism. Studies on the transcriptomic and metabolic changes occuring in earshoot can provide interesting answers about the nitrogen metabolic potential of the maize variety under study. Intermated B73 X Mo17 recombinant inbred lines (IBMRIL) belong to a predominantly used mapping population. Illinois high protein (IHP) line is a metabolic extreme with respect to nitrogen mebolism with around 30% seed protein. Developing earshoots from this genotype grown at nitrogen-deficient and nitrogen-sufficient conditions were sampled, processed and analyzed through microarray technology. IBMRIL population was crossed to IHP to find the allelic interaction related to nitrogen metabolism. Microarray experiment was conducted using the developing earshoots from IBMRIL X IHP1 lines that deffered in their grain yield significantly.

Keywords: Yield response
 
Overall design Technical replicates, dye swaps, technical replicates of dye swaps, no biological replicates
 
Contributor(s) Moose S, Boddu J
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Submission date Sep 03, 2009
Last update date Sep 24, 2013
Contact name Stephen Patrick Moose
E-mail(s) smoose@illinois.edu
Phone 2172446146
Fax 2173339817
URL http://www.cropsci.illinois.edu/faculty/moose/
Organization name University of Illinois at Urbana-Champaign
Department Crop Sciences
Lab Corn Functional Genomics Laboratory
Street address 1201 W Gregory
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platforms (2)
GPL5439 Maize oligo array version 1.9 array A
GPL5440 Maize oligo array version 1.9 array B
Samples (32)
GSM449493 Low N vs High N rep1_A177
GSM449494 Low N vs High N rep1 dye swap_A178
GSM449495 Low N vs High N rep2_A179
Relations
BioProject PRJNA119911

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17953_RAW.tar 137.9 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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