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Series GSE179682 Query DataSets for GSE179682
Status Public on Jun 03, 2022
Title Host Cell-Dependent Late Entry Step As Determinant of Hepatitis B Virus Infection
Organism Marmota monax
Experiment type Expression profiling by high throughput sequencing
Summary In search for potential host factors that may be responsible for the difference in HBV cccDNA formation during infection between WC3-huNTCP and WCH-17-huNTCP cells, we did RNA-seq analysis on these two woodchuck hepatic cell lines.
 
Overall design Total 4 samples (2 replicates of each cell line) were analyzed;
 
Contributor(s) Hong X, Imamura Kawasawa Y, Menne S, Hu J
Citation(s) 35714170
Submission date Jul 07, 2021
Last update date Jul 07, 2022
Contact name Xupeng Hong
E-mail(s) xxh64@psu.edu
Organization name Penn State College of Medicine
Department Microbiology and Immunology
Lab Jianming Hu
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platforms (1)
GPL30373 Illumina NovaSeq 6000 (Marmota monax)
Samples (4)
GSM5426231 WC3-huNTCP-1
GSM5426232 WC3-huNTCP-2
GSM5426233 WCH-17-huNTCP-1
Relations
BioProject PRJNA744545
SRA SRP327409

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179682_raw_read_count_Woodchuck_cells.csv.gz 151.3 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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