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Series GSE179742 Query DataSets for GSE179742
Status Public on Nov 08, 2021
Title Protein-RNA interactome analysis of KSHV ORF57 in BCBL-1 cells with lytic virus infection
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 34787459, 37193066, 38410462
Submission date Jul 08, 2021
Last update date Mar 07, 2024
Contact name Zhi-Ming Zheng
Organization name National Cancer Institute
Department Center for Cancer Research
Lab RNA Biology Laboratory
Street address Bldg. 535 Rm. 312
City Frederick
State/province Maryland
ZIP/Postal code 21702-1201
Country USA
 
Platforms (2)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (15)
GSM5430008 MA_IP4 (ORF57-CLIP 1)
GSM5430009 MA_IP5-1 (ORF57-CLIP 2)
GSM5430010 MA_IP5-2 (ORF57-CLIP 3)
This SuperSeries is composed of the following SubSeries:
GSE179726 CLIP-seq analysis of KSHV ORF57-associated RNAs
GSE179727 RNA-seq analysis of KSHV-infected BCBL-1 cells, a primary effusion lymphoma cell line
GSE179728 Viral RNA-binding protein KSHV ORF57 and host transcriptome
Relations
BioProject PRJNA744899

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
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