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GEO accession:
Series GSE180404
Query DataSets for GSE180404
Status
Public on May 31, 2022
Title
Hematopoietic differentiation of human iPSC is hardly affected by knockouts in DNMT3A exons despite loss of de novo DNA methylation
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Methylation profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35705990
Submission date
Jul 19, 2021
Last update date
Nov 14, 2022
Contact name
Wolfgang Wagner
E-mail(s)
wwagner@ukaachen.de
Phone
+49 241 8088611
Organization name
RWTH Aachen University
Department
Helmholtz Institute for Biomedical Engineering
Lab
Stem Cell Biology and Cellular Engineering
Street address
Pauwelsstrasse 20
City
Aachen
ZIP/Postal code
52074
Country
Germany
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL21145
Infinium MethylationEPIC
Samples (32)
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GSM5462342
iPSC wildtype 1
GSM5462343
iPSC wildtype 2
GSM5462344
iPSC wildtype 3
GSM5462345
iPSC DNMT3A exon 2-/- clone 1
GSM5462346
iPSC DNMT3A exon 2-/- clone 2
GSM5462347
iPSC DNMT3A exon 19-/- clone 1
GSM5462348
iPSC DNMT3A exon 19-/- clone 2
GSM5462349
iPSC DNMT3A exon 23-/- clone 1
GSM5462350
iPSC DNMT3A exon 23-/- clone 2
GSM5462351
iPSC-derived MSC wildtype 1
GSM5462352
iPSC-derived MSC wildtype 2
GSM5462353
iPSC-derived MSC wildtype 3
GSM5462354
iPSC-derived MSC DNMT3A exon 2-/- clone 1
GSM5462355
iPSC-derived MSC DNMT3A exon 2-/- clone 2
GSM5462356
iPSC-derived MSC DNMT3A exon 19-/- clone 1
GSM5462357
iPSC-derived MSC DNMT3A exon 19-/- clone 2
GSM5462358
iPSC-derived MSC DNMT3A exon 23-/- clone 1
GSM5462359
iPSC-derived MSC DNMT3A exon 23-/- clone 2
GSM5462360
iPSC-derived HPC wildtype 1
GSM5462361
iPSC-derived HPC wildtype 2
GSM5462362
iPSC-derived HPC wildtype 3
GSM5462363
iPSC-derived HPC DNMT3A exon 19-/- clone 1
GSM5462364
iPSC-derived HPC DNMT3A exon 19-/- clone 2
GSM5462365
iPSC-derived HPC DNMT3A exon 23-/- clone 1
GSM5462366
iPSC-derived HPC DNMT3A exon 23-/- clone 2
GSM5462367
RNA-seq_iPSC-derived HPC wildtype 1
GSM5462368
RNA-seq_iPSC-derived HPC wildtype 2
GSM5462369
RNA-seq_iPSC-derived HPC wildtype 3
GSM5462370
RNA-seq_iPSC-derived HPC DNMT3A exon 19-/- clone 1
GSM5462371
RNA-seq_iPSC-derived HPC DNMT3A exon 19-/- clone 2
GSM5462372
RNA-seq_iPSC-derived HPC DNMT3A exon 23-/- clone 1
GSM5462373
RNA-seq_iPSC-derived HPC DNMT3A exon 23-/- clone 2
This SuperSeries is composed of the following SubSeries:
GSE180402
Hematopoietic differentiation of human iPSC is hardly affected by knockouts in DNMT3A exons despite loss of de novo DNA methylation [DNA methylation]
GSE180403
Hematopoietic differentiation of human iPSC is hardly affected by knockouts in DNMT3A exons despite loss of de novo DNA methylation [RNA-seq]
Relations
BioProject
PRJNA748062
Download family
Format
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE180404_RAW.tar
512.9 Mb
(http)
(custom)
TAR (of IDAT)
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