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| Status |
Public on Mar 09, 2022 |
| Title |
Repertoires of small RNAs in Botrytis cinerea strains isolated from tomato or grapevine. |
| Organism |
Botrytis cinerea |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Sets of small RNAs from strains of Botrytis cinerea isolated from tomato or grapevine were compared to determine whether some small RNAs were specific to a population. The small RNAs were mapped to the retrotransposons identified in Sl3, Vv3 or B05.10 genomes.
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| Overall design |
Sixteen Botrytis cinerea strains, i.e., the referent strain B0510, seven strains isolated from tomato (T population), eight strains isolated from grapevine (five from G1 and three from G2 population) were grown in vitro. The small RNAs were extracted and sequenced.
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| Web link |
https://doi.org/10.1101/2022.03.07.483234
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| |
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| Contributor(s) |
Simon A, Viaud M, Walker A |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 06, 2021 |
| Last update date |
Mar 14, 2022 |
| Contact name |
Adeline SIMON |
| Organization name |
INRAE
|
| Lab |
BIOGER
|
| Street address |
22 place de l'agronomie
|
| City |
Palaiseau |
| ZIP/Postal code |
91120 |
| Country |
France |
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| Platforms (1) |
| GPL25020 |
Illumina HiSeq 4000 (Botrytis cinerea) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA752615 |
| SRA |
SRP331375 |
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