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| Status |
Public on Aug 15, 2021 |
| Title |
A chromatin immunoprecipitation database for prokarytic organisms [multi_tf] |
| Organism |
Escherichia coli K-12 |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Bacterial transcription factors (TFs) regulate gene expression to adapt to changing environments; when combined, the TF’s regulatory actions comprise transcriptional regulatory networks (TRNs). The chromatin immunoprecipitation (ChIP) assay is the major contemporary method for mapping in vivo protein-DNA interactions in the genome. It enables the genome-wide study of transcription factor binding sites (TFBSs) and gene regulation. Although rapidly accumulating publicly-available ChIP data are a valuable resource for the study of gene regulation, there are no full datasets of key regulators in E. coli K-12 MG1655. Here, we present the genome-wide binding for dozens of major TFs and NAPs in the E. coli K-12 MG1655.
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| Overall design |
Identification of genome-wide bindings for transcription factors in E. coli K-12 MG1655, using ChIP-exo technology
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| Contributor(s) |
Gao Y, Palsson B |
| Citation missing |
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| Submission date |
Aug 10, 2021 |
| Last update date |
Aug 20, 2021 |
| Contact name |
Ye Gao |
| E-mail(s) |
yeg002@ucsd.edu
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| Organization name |
UCSD
|
| Street address |
9500 Gilman Dr.
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| City |
La Jolla |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platforms (1) |
| GPL24570 |
Illumina HiSeq 2500 (Escherichia coli K-12) |
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| Samples (6)
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| This SubSeries is part of SuperSeries: |
| GSE182079 |
A chromatin immunoprecipitation database for prokarytic organisms |
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| Relations |
| BioProject |
PRJNA753455 |
| SRA |
SRP331862 |
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