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Series GSE181869 Query DataSets for GSE181869
Status Public on Aug 16, 2021
Title Ezh2 is essential for the generation of functional yolk sac derived erythro-myeloid progenitor [CUT&RUN]
Organism Mus musculus
Experiment type Other
Summary Yolk sac (YS) hematopoiesis is critical for the survival of the embryo and a major source of tissue-resident macrophages that persist into adulthood. Here we report that the epigenetic regulator Ezh2 is essential for YS hematopoiesis but dispensable for subsequent aorta–gonad–mesonephros (AGM) blood development. Loss of Ezh2 activity in hemogenic endothelium (HE) leads to the generation of phenotypically intact but functionally deficient erythro-myeloid progenitors (EMP). Ezh2 activity is critical at the onset of the endothelial-to-hematopoietic transition generating EMPs but rapidly dispensable after that. We identified a lack of downregulation of Wnt signaling as the primary reason in the generation of non-functional EMPs. Together, our findings demonstrate a critical and specific role of Ezh2 in modulating Wnt signaling during the generation of EMPs from YS HE.
 
Overall design RNA-seq, ATAC-seq and CUT&RUN profile of E10.5 yolk sac erythro-myeloid progenitors
 
Contributor(s) Neo WH, Meng Y, Rodriguez-Meira A, Fadlullah MZ, Booth CA, Azzoni E, Thongjuea S, de-Bruijn MF, Jacobsen SE, Mead AJ, Lacaud G
Citation(s) 34857757
Submission date Aug 11, 2021
Last update date Dec 06, 2021
Contact name Georges Lacaud
E-mail(s) georges.lacaud@cruk.manchester.ac.uk
Organization name Cancer Research UK Manchester Institute
Department Stem Cell Biology
Street address Alderley Park
City Alderley Edge
State/province England
ZIP/Postal code SK10 4TG
Country United Kingdom
 
Platforms (2)
GPL21626 NextSeq 550 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM5513504 IgG 500 cell [CUT&RUN]
GSM5513505 IgG 15000 cell [CUT&RUN]
GSM5513506 H3K27me3 500 cell [CUT&RUN]
This SubSeries is part of SuperSeries:
GSE181873 Ezh2 is essential for the generation of functional yolk sac derived erythro-myeloid progenitors.
Relations
BioProject PRJNA753786
SRA SRP332064

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE181869_RAW.tar 87.1 Mb (http)(custom) TAR (of BED, BW, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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