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Series GSE182931 Query DataSets for GSE182931
Status Public on Nov 24, 2021
Title Time-restricted feeding prevents deleterious metabolic effects of circadian disruption through epigenetic control of β-cell function [RNAseq]
Organisms Mus musculus; Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Circadian rhythm disruption (CD) is associated with dysregulation of glucose homeostasis and Type 2 diabetes mellitus (T2DM). While the link between CD and T2DM remains unclear, there is accumulating evidence that disruption of fasting/feeding cycles mediates CD-induced metabolic dysfunction. Herein we utilized an approach encompassing analysis of behavioral, physiological, transcriptomic, and single-cell epigenomic effects of CD and consequences of restoration of fasting/feeding cycles through time-restricted feeding (tRF) in mice. Results show that CD perturbs glucose homeostasis through disruption of pancreatic β-cell function and loss of circadian β-cell transcriptional and epigenetic control. In contrast, restoration of fasting/feeding cycle prevented CD-mediated metabolic dysfunction by reestablishing circadian regulation of glucose tolerance, β-cell function, β-cell transcriptional profile, and reestablishment of proline and acidic amino acid-rich basic leucine zipper (PAR-bZIP) transcription factor activity in β-cells. This study provides mechanistic insights into beneficial effects of tRF and its role in prevention of β-cell failure in T2DM.
 
Overall design Examination of gene expression in: (1) Pancreatic islets from mice exposed to either control, circadian disruption, or circadian disruption plus 8h time-restricted feeding; (2) INS-1 832/13 cells transfected with scramble or Dbp siRNA
 
Contributor(s) Brown MR, Sen SK, Mazzone A, Her TK, Xiong Y, Lee J, Javeed N, Colwell CS, Rakshit K, Lebrasseur NK, Gaspar-Maia A, Ordog T, Matveyenko AV
Citation(s) 34910509
Submission date Aug 27, 2021
Last update date Feb 23, 2022
Contact name Matthew R Brown
E-mail(s) brownm@broadinstitute.org
Organization name Broad Institute
Street address 75 Ames St
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL22396 Illumina HiSeq 4000 (Rattus norvegicus)
Samples (42)
GSM5543368 Scramble siRNA-1 (RNA-seq)
GSM5543369 Scramble siRNA-2 (RNA-seq)
GSM5543370 Scramble siRNA-3 (RNA-seq)
This SubSeries is part of SuperSeries:
GSE182938 Time-restricted feeding prevents deleterious metabolic effects of circadian disruption through epigenetic control of β-cell function
Relations
BioProject PRJNA758375
SRA SRP334470

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE182931_RNAseq_CountMatrix_CON_CD_CDtRF.xlsx 4.4 Mb (ftp)(http) XLSX
GSE182931_RNAseq_CountMatrix_Dbp_siRNA.xlsx 811.4 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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