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| Status |
Public on Sep 03, 2021 |
| Title |
Comparison of transcriptomic responses to pancreas disease (PD) and heart and skeletal muscle inflammation (HSMI) in heart of Atlantic salmon |
| Organism |
Salmo salar |
| Experiment type |
Expression profiling by array
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| Summary |
PD and HSMI are viral diseases that cause heavy damages in Atlantic salmon aquaculture. This study was performed to examine and compare the time-courses of transcriptome responses to the causative agents - salmon alphavirus (SAV) and piscine reovirus (PRV).
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| Overall design |
Two challenge trials were carried out and samples were collected at four (SAV) and five (PRV) time-points. Analyses were run in heart, the most infected and damaged tissue.
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| Contributor(s) |
Krasnov A, Johansen LH, Jørgensen J |
| Citation(s) |
26232631 |
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| Submission date |
Sep 02, 2021 |
| Last update date |
Oct 29, 2021 |
| Contact name |
Aleksei Krasnov |
| E-mail(s) |
aleksei.krasnov@nofima.no
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| Phone |
+47 97602165
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| Organization name |
Nofima AS
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| Department |
Fish Health
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| Street address |
Osloveien 1
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| City |
Aas |
| ZIP/Postal code |
1430 |
| Country |
Norway |
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| Platforms (1) |
| GPL30031 |
Agilent-030860 Nofima Atlantic salmon microarray, version 6 |
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| Samples (46)
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| GSM5554111 |
PD, day 21, fish 2 |
| GSM5554112 |
PD, day 21, fish 3 |
| GSM5554113 |
PD, day 21, fish 4 |
| GSM5554114 |
PD, day 21, fish 5 |
| GSM5554115 |
PD, day 21, fish 6 |
| GSM5554116 |
PD, day 21, fish 7 |
| GSM5554117 |
PD, day 28, fish 1 |
| GSM5554118 |
PD, day 28, fish 2 |
| GSM5554119 |
PD, day 28, fish 3 |
| GSM5554120 |
PD, day 28, fish 4 |
| GSM5554121 |
PD, day 28, fish 5 |
| GSM5554122 |
PD, day 28, fish 6 |
| GSM5554123 |
PD, day 28, fish 7 |
| GSM5554124 |
PD, day 35, fish 1 |
| GSM5554125 |
PD, day 35, fish 2 |
| GSM5554126 |
PD, day 35, fish 3 |
| GSM5554127 |
PD, day 35, fish 4 |
| GSM5554128 |
PD, day 35, fish 5 |
| GSM5554129 |
PD, day 35, fish 6 |
| GSM5554130 |
HSMI, week 6, fish 1 |
| GSM5554131 |
HSMI, week 6, fish 2 |
| GSM5554132 |
HSMI, week 6, fish 4 |
| GSM5554133 |
HSMI, week 6, fish 5 |
| GSM5554134 |
HSMI, week 7, fish 1 |
| GSM5554135 |
HSMI, week 7, fish 2 |
| GSM5554136 |
HSMI, week 7, fish 3 |
| GSM5554137 |
HSMI, week 7, fish 4 |
| GSM5554138 |
HSMI, week 7, fish 5 |
| GSM5554139 |
HSMI, week 8, fish 1 |
| GSM5554140 |
HSMI, week 8, fish 2 |
| GSM5554141 |
HSMI, week 8, fish 3 |
| GSM5554142 |
HSMI, week 8, fish 4 |
| GSM5554143 |
HSMI, week 8, fish 5 |
| GSM5554144 |
HSMI, week 9, fish 1 |
| GSM5554145 |
HSMI, week 9, fish 2 |
| GSM5554146 |
HSMI, week 9, fish 3 |
| GSM5554147 |
HSMI, week 9, fish 4 |
| GSM5554148 |
HSMI, week 9, fish 5 |
| GSM5554149 |
HSMI, week 11, fish 1 |
| GSM5554150 |
HSMI, week 11, fish 2 |
| GSM5554151 |
HSMI, week 11, fish 3 |
| GSM5554152 |
HSMI, week 11, fish 4 |
| GSM5554153 |
HSMI, week 11, fish 5 |
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| Relations |
| BioProject |
PRJNA759849 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE183260_RAW.tar |
60.6 Mb |
(http)(custom) |
TAR (of GPR, TXT) |
| Processed data included within Sample table |
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