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| Status |
Public on Jan 14, 2022 |
| Title |
Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues |
| Organism |
Sus scrofa |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Domestication of pig results in modifications of many traits, including fatness traits, which are important in pig production since they have effect on meat quality, fattening efficiency, reproduction and immunity.In this study, we investigate 3D genome organization and transcriptomic characterization of adipose tissues (ATs) between wild boars and Bama pig, a typical indigenous domestic pig in China, to uncover molecular mechanisms of fatness-phenotypic shifts.
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| Overall design |
We analyzed chromatin conformation capture sequencing (Hi-C) data and RNA sequencing (RNA-seq) data of two adipose tissues ( upper layer of backfat tissue and greater omentum fat tissue)of wild boar and Bama pig with 2 replicates for inter-breed comparison
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| Contributor(s) |
Zhang J, Liu P, Li D, Li M |
| Citation(s) |
35277200 |
| BioProject |
PRJNA760246 |
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| Submission date |
Sep 05, 2021 |
| Last update date |
Mar 31, 2022 |
| Contact name |
jin long |
| E-mail(s) |
longjin8806@163.com
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| Organization name |
Sichuan Agricultural University
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| Street address |
Hui ming
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| City |
Chengdu |
| ZIP/Postal code |
611130 |
| Country |
China |
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| Platforms (2) |
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| Samples (14)
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