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Series GSE183705 Query DataSets for GSE183705
Status Public on Sep 15, 2022
Title Transcriptomic changes and toxicologic potential of per/polyflourinated alkyl substances (pfas) in laboratory animals via gavage
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary The US EPA has identified a number of PFAS and other chemicals of high priority to States and Regional EPA offices that have no available in vivo toxicology data. Based on the list of data-poor chemicals and availability of the chemicals, four were selected for 5-day hepatic and renal transcriptomic assessments in male and female Hsd: Sprague Dawley (SD) rats. These data will be used for determining provisional pathway-based transcriptomic BMDs for use in human health risk estimations. Traditional toxicological endpoints (e.g. organ weights and clinical chemistry) have been added to the studies to provide additional contextualizaing information (i.e., phenotypic anchoring).
 
Overall design Male and female SD rats were placed on NTP-2000 diet and housed up to 5 animals per cage. After a 10-14 day quarantine, 8-10 week old animals were randomly assigned to treatment and control groups. Five additional animals were included for sentinel evaluation prior to quarantine release and resampled at study termination. Each of six chemicals was given at nine doses (5 mL/kg dosing volume) to the treatment groups. A vehicle control group was also included for each chemical. Male and female rats received the test formulations via gavage for five consecutive days. All animals were euthanized the day after the last dose was administered.
 
Contributor(s) Scott A
Citation(s) 38903859
Submission date Sep 08, 2021
Last update date Jun 28, 2024
Contact name Scott Auerbach
E-mail(s) AuerbachS@niehs.nih.gov
Organization name Division of the National Toxicology Program at NIEHS
Street address 111 TW Alexander Drive
City Durham
State/province North Carolina
ZIP/Postal code 27709
Country USA
 
Platforms (1)
GPL25947 Illumina NovaSeq 6000 (Rattus norvegicus)
Samples (832)
GSM5568107 Plate1-101-Liver
GSM5568108 Plate1-102-Liver
GSM5568109 Plate1-103-Liver
Relations
BioProject PRJNA761715
SRA SRP336211

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183705_SP0219_Plates1-4_gene_counts.csv.gz 848.0 Kb (ftp)(http) CSV
GSE183705_SP0219_Plates5-8_gene_counts.csv.gz 1016.0 Kb (ftp)(http) CSV
GSE183705_SP0219_Plates9-12_gene_counts.csv.gz 685.2 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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