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| Status |
Public on Mar 06, 2022 |
| Title |
A coordinated regulatory network of ApiAP2 transcription factors involved in heterochromatic gene expression during Plasmodium falciparum blood-stage development [RNA-Seq] |
| Organism |
Plasmodium falciparum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Effects of PfApiAP2 knockouts on gene expression in the intraerythrocytic cycle
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| Overall design |
at least 2 biological RNA-seq replicates for wild type and PfApiAP2 knockout parasite lines at the ring (10-15 hpi), trophozoite (25-30 hpi), and schizont (40-45 hpi) stages, respectively
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| Contributor(s) |
Jiang M, Shang X, Zhang Q |
| Citation(s) |
35288749 |
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| Submission date |
Sep 23, 2021 |
| Last update date |
Apr 19, 2022 |
| Contact name |
Mei Jiang |
| E-mail(s) |
gingerplum@hotmail.com
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| Phone |
862165985138
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| Organization name |
Tongji University
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| Street address |
1239 Siping Road
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| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
200092 |
| Country |
China |
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| Platforms (1) |
| GPL26835 |
HiSeq X Ten (Plasmodium falciparum) |
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| Samples (48)
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| GSM5594325 |
3D7_WT_T_RNA-seq, Rep1 |
| GSM5594326 |
3D7_WT_T_RNA-seq, Rep2 |
| GSM5594327 |
3D7_WT_T_RNA-seq, Rep3 |
| GSM5594328 |
3D7_WT_S_RNA-seq, Rep1 |
| GSM5594329 |
3D7_WT_S_RNA-seq, Rep2 |
| GSM5594330 |
3D7_WT_S_RNA-seq, Rep3 |
| GSM5594331 |
3D7_AP2-G2-KO_R_RNA-seq, Rep1 |
| GSM5594332 |
3D7_AP2-G2-KO_R_RNA-seq, Rep2 |
| GSM5594333 |
3D7_AP2-G2-KO_T_RNA-seq, Rep1 |
| GSM5594334 |
3D7_AP2-G2-KO_T_RNA-seq, Rep2 |
| GSM5594335 |
3D7_AP2-G2-KO_S_RNA-seq, Rep1 |
| GSM5594336 |
3D7_AP2-G2-KO_S_RNA-seq, Rep2 |
| GSM5594337 |
3D7_AP2-G4-KO_R_RNA-seq, Rep1 |
| GSM5594338 |
3D7_AP2-G4-KO_R_RNA-seq, Rep2 |
| GSM5594339 |
3D7_AP2-G4-KO_T_RNA-seq, Rep1 |
| GSM5594340 |
3D7_AP2-G4-KO_T_RNA-seq, Rep2 |
| GSM5594341 |
3D7_AP2-G4-KO_S_RNA-seq, Rep1 |
| GSM5594342 |
3D7_AP2-G4-KO_S_RNA-seq, Rep2 |
| GSM5594343 |
3D7_AP2-G5-KO_R_RNA-seq, Rep1 |
| GSM5594344 |
3D7_AP2-G5-KO_R_RNA-seq, Rep2 |
| GSM5594345 |
3D7_AP2-G5-KO_T_RNA-seq, Rep1 |
| GSM5594346 |
3D7_AP2-G5-KO_T_RNA-seq, Rep2 |
| GSM5594347 |
3D7_AP2-G5-KO_S_RNA-seq, Rep1 |
| GSM5594348 |
3D7_AP2-G5-KO_S_RNA-seq, Rep2 |
| GSM5594349 |
3D7_AP2-HC-KO_R_RNA-seq, Rep1 |
| GSM5594350 |
3D7_AP2-HC-KO_R_RNA-seq, Rep2 |
| GSM5594351 |
3D7_AP2-HC-KO_R_RNA-seq, Rep3 |
| GSM5594352 |
3D7_AP2-HC-KO_T_RNA-seq, Rep1 |
| GSM5594353 |
3D7_AP2-HC-KO_T_RNA-seq, Rep2 |
| GSM5594354 |
3D7_AP2-HC-KO_T_RNA-seq, Rep3 |
| GSM5594355 |
3D7_AP2-HC-KO_S_RNA-seq, Rep1 |
| GSM5594356 |
3D7_AP2-HC-KO_S_RNA-seq, Rep2 |
| GSM5594357 |
3D7_AP2-HC-KO_S_RNA-seq, Rep3 |
| GSM5594358 |
3D7_AP2-HS-KO_R_RNA-seq, Rep1 |
| GSM5594359 |
3D7_AP2-HS-KO_R_RNA-seq, Rep2 |
| GSM5594360 |
3D7_AP2-HS-KO_T_RNA-seq, Rep1 |
| GSM5594361 |
3D7_AP2-HS-KO_T_RNA-seq, Rep2 |
| GSM5594362 |
3D7_AP2-HS-KO_S_RNA-seq, Rep1 |
| GSM5594363 |
3D7_AP2-HS-KO_S_RNA-seq, Rep2 |
| GSM5594364 |
3D7_AP2-O2-KO_R_RNA-seq, Rep1 |
| GSM5594365 |
3D7_AP2-O2-KO_R_RNA-seq, Rep2 |
| GSM5594366 |
3D7_AP2-O2-KO_T_RNA-seq, Rep1 |
| GSM5594367 |
3D7_AP2-O2-KO_T_RNA-seq, Rep2 |
| GSM5594368 |
3D7_AP2-O2-KO_S_RNA-seq, Rep1 |
| GSM5594369 |
3D7_AP2-O2-KO_S_RNA-seq, Rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE184659 |
A coordinated regulatory network of ApiAP2 transcription factors involved in heterochromatic gene expression during Plasmodium falciparum blood-stage development |
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| Relations |
| BioProject |
PRJNA765585 |
| SRA |
SRP339065 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE184645_gene_raw_counts.csv.gz |
513.4 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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