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| Status |
Public on Mar 30, 2023 |
| Title |
Dynamics of Chromatin Accessibility during Hematopoietic Stem Cell Differentiation into Lineage-Committed Progeny |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Epigenetic mechanisms regulate the multilineage differentiation capacity of hematopoietic stem cells (HSCs) into a variety of blood and immune cells. Our recent work revealed evidence of multilineage gene priming in HSCs, where open cis-regulatory elements (CREs) exclusively shared between HSCs and unipotent lineage cells were enriched for DNA binding motifs of known lineage-specific transcription factors. To test the hypothesis that HSC-primed lineage-specific CREs remain accessible throughout differentiation, we used ATAC-seq to map the temporal dynamics of chromatin remodeling during blood cell differentiation. We observed epigenetic-driven clustering of oligopotent and unipotent progenitors into distinct erythromyeloid and lymphoid branches, with multipotent HSCs and MPPs associating with the erythromyeloid lineage. We mapped the dynamics of lineage-primed CREs throughout hematopoiesis and identified both unique and shared CREs as potential lineage reinforcement mechanisms at fate branch points in hematopoiesis. These findings provide insight into the regulation of stem cell multipotency and lineage commitment throughout hematopoiesis and serve as a resource to test functional drivers of hematopoietic lineage fate.
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| |
|
| Overall design |
ATAC-seq of Hematopoietic Progenitors, 7 cell types
|
| Web link |
https://doi.org/10.1093/stmcls/sxad022
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| |
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| Contributor(s) |
Martin EW, Rodriguez y Baena A, Reggiardo RE, Krietsch J, Kim DH, Forsberg EC |
| Citation(s) |
36945732 |
| |
| Submission date |
Sep 27, 2021 |
| Last update date |
Apr 10, 2024 |
| Contact name |
Camilla Forsberg |
| E-mail(s) |
cforsber@soe.ucsc.edu
|
| Phone |
8314592111
|
| Organization name |
Institute for the Biology of Stem Cells, University of California Santa Cruz
|
| Street address |
1156 High Street
|
| City |
Santa Cruz |
| State/province |
California |
| ZIP/Postal code |
95064 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (14)
|
|
| Relations |
| BioProject |
PRJNA766652 |
| SRA |
SRP338926 |
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