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| Status |
Public on May 08, 2023 |
| Title |
Evolutionarily divergent mTOR remodels translatome for tissue regeneration |
| Organism |
Ambystoma mexicanum |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
An outstanding mystery in biology is why some species, such as the axolotl, can regenerate tissues whereas mammals cannot1. Here, we demonstrate that rapid activation of protein synthesis is a unique feature of the injury response critical for limb regeneration in the axolotl (Ambystoma mexicanum). By applying polysome sequencing, we identify hundreds of transcripts, including antioxidants and ribosome components that are selectively activated at the level of translation from pre-existing messenger RNAs in response to injury. By contrast, protein synthesis is not activated in response to non-regenerative digit amputation in the mouse. We identify the mTORC1 pathway as a key upstream signal that mediates tissue regeneration and translational control in the axolotl. We discover unique expansions in mTOR protein sequence among urodele amphibians. By engineering an axolotl mTOR (axmTOR) in human cells, we show that these changes create a hypersensitive kinase that allows axolotls to maintain this pathway in a highly labile state primed for rapid activation. This change renders axolotl mTOR more sensitive to nutrient sensing, and inhibition of amino acid transport is sufficient to inhibit tissue regeneration. Together, these findings highlight the unanticipated impact of the translatome on orchestrating the early steps of wound healing in a highly regenerative species and provide a missing link in our understanding of vertebrate regenerative potential.
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| Overall design |
Axolotl limbs were amputated and tissue was harvested from the plane of amputation at 0 h and 24 h post-amputation. The tissue was lysed and part of the lysate was retained as the "input" sample for RNA-Seq analysis. The remaining lysate was subjected to sucrose gradient fractionation followed by pooling and RNA-Seq of mRNAs associated with the free/RNP, light polysome and heavy polysome fractions.
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| Web link |
https://www.nature.com/articles/s41586-023-06365-1
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| Contributor(s) |
Zhulyn O, Rosenblatt HD, Shokat L, Dai S, Kuzuoglu-Öztürk D, Zhang Z, Ruggero D, Shokat KM, Barna M |
| Citation(s) |
37495694 |
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| Submission date |
Oct 08, 2021 |
| Last update date |
Aug 09, 2023 |
| Contact name |
Maria Barna |
| Organization name |
Stanford University
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| Department |
Genetics
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| Lab |
Barna lab
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| Street address |
240 Pasteur Drive, 4500
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| City |
Palo Alto |
| State/province |
CA |
| ZIP/Postal code |
94304 |
| Country |
USA |
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| Platforms (1) |
| GPL30838 |
Illumina HiSeq 4000 (Ambystoma mexicanum) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA769730 |
| SRA |
SRP340595 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE185593_10072021_ERCC_normalized_counts.txt.gz |
6.8 Mb |
(ftp)(http) |
TXT |
| GSE185593_10072021_expected_counts_matrix.txt.gz |
3.7 Mb |
(ftp)(http) |
TXT |
| GSE185593_10072021_normalized_and_filtered_for_analysis.txt.gz |
1.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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