|
| Status |
Public on Oct 20, 2021 |
| Title |
mRNA expression profile of bovine monocyte derived macrophages infected with Mycobacterium avium subsp. Paratuberculosis (MAP) |
| Organism |
Bos taurus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
In order to gain a better understanding of MAP infection in immature macrophages, high-throughput sequencing technology was used to perform an analysis of mRNAs profiles of bovine monocyte derived macrophages upon MAP infection. The total numbers of raw reads collected from the MAP-infected and control MDM cells were 93.6 and 102 million raw reads per library. After removing low-quality sequences, Adaptor sequences and sequences containing more than 5% N (N means that base information cannot be determined), 91.7 and 100 million clean reads were obtained respectively. The analyses of differential expression revealed 618 DE mRNAs in MDM challenged with MAP compared to the control MDM, Among the DE mRNAs, 322 were upregulated and 296 were downregulated.Furthermore, The GO and KEGG pathway enrichment of these mRNA targets were performed.
|
| |
|
| Overall design |
Infecting bovine peripheral blood mononuclear macrophages with Mycobacterium avium subsp. paratuberculosis
mRNA-sequencing analysis was performed on an Illumina Hiseq 4000 following the vendor's recommended protocol
|
| |
|
| Contributor(s) |
Bao Y |
| Citation(s) |
35046920 |
| Submission date |
Oct 10, 2021 |
| Last update date |
Jan 31, 2022 |
| Contact name |
Yanhong Bao |
| E-mail(s) |
byh182435266810907@126.com
|
| Phone |
18243526681
|
| Organization name |
Jilin Agricultural University
|
| Street address |
jilin changchun
|
| City |
Changchun |
| State/province |
jilin |
| ZIP/Postal code |
130118 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL26012 |
Illumina NovaSeq 6000 (Bos taurus) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA770074 |
| SRA |
SRP340728 |
Less...
More...