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Series GSE185816 Query DataSets for GSE185816
Status Public on Jun 17, 2024
Title Comparative ATACseq Between Killifish Species
Organisms Aphyosemion australe; Austrofundulus limnaeus; Iconisemion striatum; Nothobranchius furzeri
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We evaluate the global chromatin changes that occur during the developmental progression and development-to-diapause transition in a closely related set of killifish species.
Overall design Time-course examination the global chromatin landscape changes during the tranistion from development-to-diapause in the African turquoise killifish, South American killifish, and equivalent developmental stages in the red-striped and lyretail killifish.
Contributor(s)  Singh PP, Reeves GA, Contrepois K, Papsdorf K, Miklas J, Hu C, Ellenberger M, Snyder MP, Brunet A
Citation(s) 38810644
Submission date Oct 13, 2021
Last update date Jun 18, 2024
Contact name Anne Brunet
Organization name Stanford University
Department Genetics
Lab Brunet Lab
Street address 290 Jane Stanford Way
City Stanford
State/province California
ZIP/Postal code 94305
Country USA
Platforms (4)
GPL30852 NextSeq 550 (Nothobranchius furzeri)
GPL30853 NextSeq 550 (Iconisemion striatum)
GPL30854 NextSeq 550 (Aphyosemion australe)
Samples (30)
GSM5624104 Nfur Pre-Diapause ATACseq Rep1
GSM5624105 Nfur Pre-Diapause ATACseq Rep2
GSM5624106 Nfur Development ATACseq Rep1
This SubSeries is part of SuperSeries:
GSE185817 Comparative seq Between Killifish Species
BioProject PRJNA770947
SRA SRP341185

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185816_Aaus_consensusPeaks_rpkm.txt.gz 1.7 Mb (ftp)(http) TXT
GSE185816_Alim_consensusPeaks_rpkm.txt.gz 446.8 Kb (ftp)(http) TXT
GSE185816_Alim_consensusPreaks_rpkm.txt.gz 3.7 Mb (ftp)(http) TXT
GSE185816_Astr_consensusPeaks_rpkm.txt.gz 1.4 Mb (ftp)(http) TXT
GSE185816_Nfur_consensusPeaks_rpkm.txt.gz 2.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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