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Series GSE185875 Query DataSets for GSE185875
Status Public on Aug 30, 2023
Title OsPSTOL1 is prevalent in upland rice and enhances root growth and phosphate sufficiency in wheat
Organism Triticum aestivum
Experiment type Expression profiling by high throughput sequencing
Summary Improvement of phosphorus (P) uptake by crops is a prerequisite for sustainable agriculture. Rice (Oryza sativa L.) PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) increases root growth and total P uptake. Here, a biogeographic survey of rice demonstrates OsPSTOL1 loss in a subset of japonica rice after the temperate-tropical split and frequent absence in paddy varieties of east Asia. OsPSTOL1 absence or loss-of-function alleles prevail in landraces from regions with fertilizer use and controlled irrigation, suggesting it is an adaptive genetic variant in low nutrient rainfed ecosystems. OsPSTOL1 is a truncated member of a family of multi-module kinases associated with microbial interactions. We demonstrate that ectopic expression of OsPSTOL1 in wheat (Triticum aestivum L.) increases shoot and root growth under low P conditions, promotes root plasticity, and hastens induction of the low P response pathway. OsPSTOL1’s influence on adaptive root development in wheat validates its potential for broad utilization in crop improvement.
 
Overall design Two independent transgenic lines ectopically ovexpressing OsPSTOL1 (PSTOL1.1 and PSTOL1.2) and their null segregants (Null) were grown under high (HP) and low (LP). phosphate conditions. Tissues from whole roots and crowns were sampled at 36 (E) and 50 (L) days after sowing (DAS).
 
Contributor(s) Kettenburg AT, Lopez MA, Yogendra K, Prior MJ, Rose T, Bimson S, Heuer S, Roy SJ, Bailey-Serres J
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Submission date Oct 13, 2021
Last update date Aug 30, 2023
Contact name Julia Bailey-Serres
E-mail(s) Serres@ucr.edu
Organization name UC Riverside
Department Department of Botany and Plant Sciences
Street address 900 University Ave
City Riverside
State/province California
ZIP/Postal code 92521
Country USA
 
Platforms (1)
GPL26889 Illumina NextSeq 500 (Triticum aestivum)
Samples (72)
GSM5625101 Null_Root_36DAS_HP_1
GSM5625102 Null_Root_36DAS_HP_2
GSM5625103 Null_Root_36DAS_HP_3
Relations
BioProject PRJNA771082
SRA SRP341297

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185875_RPKM_Final_Replicates.xlsx 90.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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