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Series GSE185884 Query DataSets for GSE185884
Status Public on Jan 04, 2023
Title Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 36882470
Submission date Oct 13, 2021
Last update date Mar 14, 2023
Contact name Hyoung-Pyo Kim
E-mail(s) kimhp@yuhs.ac
Organization name Yonsei University College of Medicine
Department Department of Tropical Medicine
Street address Yonsei-ro 50-1
City Seoul
ZIP/Postal code 03722
Country South Korea
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (92)
GSM5625199 WT_input
GSM5625200 WTLPS_input
GSM5625201 KO_input
This SuperSeries is composed of the following SubSeries:
GSE185880 Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (ChIP-seq)
GSE185881 Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (RNA-seq)
GSE185882 Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiC)
Relations
BioProject PRJNA771097

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185884_RAW.tar 37.1 Gb (http)(custom) TAR (of BED, BW, HIC, RESULTS)
SRA Run SelectorHelp

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