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GEO accession:
Series GSE186589
Query DataSets for GSE186589
Status
Public on Mar 13, 2023
Title
Epigenetic dysregulation from chromosomal transit in micronuclei
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37286593
Submission date
Oct 26, 2021
Last update date
Jun 14, 2023
Contact name
Albert S Agustinus
Organization name
Memorial Sloan Kettering Cancer Center
Street address
408 East 69th Street, Room 419-G
City
New York
State/province
New York
ZIP/Postal code
10021
Country
USA
Platforms (5)
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GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (187)
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GSM5656679
4T1 Sorted intact micronuclei rep 1
GSM5656680
4T1 Sorted intact micronuclei rep 2
GSM5656681
4T1 Sorted ruptured micronuclei rep 1
GSM5656682
4T1 Sorted ruptured micronuclei rep 2
GSM5656683
4T1 Sorted primary nuclei rep1
GSM5656684
4T1 Sorted primary nuclei rep2
GSM5656758
RPE-1 p53KO + DMSO
GSM5656761
RPE-1 p53KO + DMSO Rep 2
GSM5656763
RPE-1 p53KO + DMSO Rep 3
GSM5656766
RPE-1 p53KO LMB2OE + DMSO
GSM5656768
RPE-1 p53KO LMB2OE + DMSO 2
GSM5656770
RPE-1 p53KO LMB2OE + DMSO 3
GSM5656772
RPE-1 p53KO LMB2OE + Reversine
GSM5656775
RPE-1 p53KO LMB2OE + Reversine 2
GSM5656777
RPE-1 p53KO LMB2OE + Reversine 3
GSM5656779
RPE-1 p53KO + Reversine
GSM5656782
RPE-1 p53KO + Reversine 2
GSM5656784
RPE-1 p53KO + Reversine 3
GSM5678031
Parental Control of DLD-1
GSM5678032
DLD-1 Clone 6
GSM5678033
DLD-1 Clone 8
GSM5678034
DLD-1 Clone 9
GSM5678035
DLD-1 Clone 12
GSM5678036
DLD-1 Clone 13
GSM5678037
DLD-1 Clone 15
GSM5678038
DLD-1 Clone 16
GSM5678039
DLD-1 Clone 17
GSM5678040
DLD-1 Clone 18
GSM5678041
DLD-1 Clone 19
GSM5678042
DLD-1 Clone 22
GSM5678043
DLD-1 Clone 26
GSM5678044
DLD-1 Clone 32
GSM5678045
DLD-1 Clone 36
GSM5687539
RPE-1 p53KO + DMSO (RNA-seq)
GSM5687540
RPE-1 p53KO + DMSO Rep 2 (RNA-seq)
GSM5687541
RPE-1 p53KO + DMSO Rep 3 (RNA-seq)
GSM5687542
RPE-1 p53KO LMB2OE + DMSO (RNA-seq)
GSM5687543
RPE-1 p53KO LMB2OE + DMSO 2 (RNA-seq)
GSM5687544
RPE-1 p53KO LMB2OE + DMSO 3 (RNA-seq)
GSM5687545
RPE-1 p53KO LMB2OE + Reversine (RNA-seq)
GSM5687546
RPE-1 p53KO LMB2OE + Reversine 2 (RNA-seq)
GSM5687547
RPE-1 p53KO LMB2OE + Reversine 3 (RNA-seq)
GSM5687548
RPE-1 p53KO + Reversine (RNA-seq)
GSM5687549
RPE-1 p53KO + Reversine 2 (RNA-seq)
GSM5687550
RPE-1 p53KO + Reversine 3 (RNA-seq)
GSM6597766
DLD-1 parental H3K4me3 biol rep 1
GSM6597767
DLD-1 parental H3K4me3 biol rep 2
GSM6597768
DLD-1 parental H3K27me3 biol rep 1
GSM6597769
DLD-1 parental H3K27me3 biol rep 2
GSM6597770
DLD-1 parental H3K27ac biol rep 1
GSM6597771
DLD-1 parental H3K27ac biol rep 2
GSM6597772
DLD-1 cln6 H3K4me3 biol rep 1
GSM6597773
DLD-1 cln6 H3K4me3 biol rep 2
GSM6597774
DLD-1 cln6 H3K27me3 biol rep 1
GSM6597775
DLD-1 cln6 H3K27me3 biol rep 2
GSM6597776
DLD-1 cln6 H3K27ac biol rep 1
GSM6597777
DLD-1 cln6 H3K27ac biol rep 2
GSM6597778
DLD-1 cln8 H3K4me3 biol rep 1
GSM6597779
DLD-1 cln8 H3K4me3 biol rep 2
GSM6597780
DLD-1 cln8 H3K27me3 biol rep 1
GSM6597781
DLD-1 cln8 H3K27me3 biol rep 2
GSM6597782
DLD-1 cln8 H3K27ac biol rep 1
GSM6597783
DLD-1 cln8 H3K27ac biol rep 2
GSM6597784
DLD-1 cln9 H3K4me3 biol rep 1
GSM6597785
DLD-1 cln9 H3K4me3 biol rep 2
GSM6597786
DLD-1 cln9 H3K27me3 biol rep 1
GSM6597787
DLD-1 cln9 H3K27me3 biol rep 2
GSM6597788
DLD-1 cln9 H3K27ac biol rep 1
GSM6597789
DLD-1 cln9 H3K27ac biol rep 2
GSM6597790
DLD-1 cln12 H3K4me3 biol rep 1
GSM6597791
DLD-1 cln12 H3K4me3 biol rep 2
GSM6597792
DLD-1 cln12 H3K27me3 biol rep 1
GSM6597793
DLD-1 cln12 H3K27me3 biol rep 2
GSM6597794
DLD-1 cln12 H3K27ac biol rep 1
GSM6597795
DLD-1 cln12 H3K27ac biol rep 2
GSM6597796
DLD-1 cln13 H3K4me3 biol rep 1
GSM6597797
DLD-1 cln13 H3K4me3 biol rep 2
GSM6597798
DLD-1 cln13 H3K27me3 biol rep 1
GSM6597799
DLD-1 cln13 H3K27me3 biol rep 2
GSM6597800
DLD-1 cln13 H3K27ac biol rep 1
GSM6597801
DLD-1 cln13 H3K27ac biol rep 2
GSM6597802
DLD-1 cln15 H3K4me3 biol rep 1
GSM6597803
DLD-1 cln15 H3K4me3 biol rep 2
GSM6597804
DLD-1 cln15 H3K27me3 biol rep 1
GSM6597805
DLD-1 cln15 H3K27me3 biol rep 2
GSM6597806
DLD-1 cln15 H3K27ac biol rep 1
GSM6597807
DLD-1 cln15 H3K27ac biol rep 2
GSM6597808
DLD-1 cln16 H3K4me3 biol rep 1
GSM6597809
DLD-1 cln16 H3K4me3 biol rep 2
GSM6597810
DLD-1 cln16 H3K27me3 biol rep 1
GSM6597811
DLD-1 cln16 H3K27me3 biol rep 2
GSM6597812
DLD-1 cln16 H3K27ac biol rep 1
GSM6597813
DLD-1 cln16 H3K27ac biol rep 2
GSM6597814
DLD-1 cln17 H3K4me3 biol rep 1
GSM6597815
DLD-1 cln17 H3K4me3 biol rep 2
GSM6597816
DLD-1 cln17 H3K27me3 biol rep 1
GSM6597817
DLD-1 cln17 H3K27me3 biol rep 2
GSM6597818
DLD-1 cln17 H3K27ac biol rep 1
GSM6597819
DLD-1 cln17 H3K27ac biol rep 2
GSM6597820
DLD-1 cln18 H3K4me3 biol rep 1
GSM6597821
DLD-1 cln18 H3K4me3 biol rep 2
GSM6597822
DLD-1 cln18 H3K27me3 biol rep 1
GSM6597823
DLD-1 cln18 H3K27me3 biol rep 2
GSM6597824
DLD-1 cln18 H3K27ac biol rep 1
GSM6597825
DLD-1 cln18 H3K27ac biol rep 2
GSM6597826
DLD-1 cln19 H3K4me3 biol rep 1
GSM6597827
DLD-1 cln19 H3K4me3 biol rep 2
GSM6597828
DLD-1 cln19 H3K27me3 biol rep 1
GSM6597829
DLD-1 cln19 H3K27me3 biol rep 2
GSM6597830
DLD-1 cln19 H3K27ac biol rep 1
GSM6597831
DLD-1 cln19 H3K27ac biol rep 2
GSM6597832
DLD-1 cln22 H3K4me3 biol rep 1
GSM6597833
DLD-1 cln22 H3K4me3 biol rep 2
GSM6597834
DLD-1 cln22 H3K27me3 biol rep 1
GSM6597835
DLD-1 cln22 H3K27me3 biol rep 2
GSM6597836
DLD-1 cln22 H3K27ac biol rep 1
GSM6597837
DLD-1 cln22 H3K27ac biol rep 2
GSM6597838
DLD-1 cln26 H3K4me3 biol rep 1
GSM6597839
DLD-1 cln26 H3K4me3 biol rep 2
GSM6597840
DLD-1 cln26 H3K27me3 biol rep 1
GSM6597841
DLD-1 cln26 H3K27me3 biol rep 2
GSM6597842
DLD-1 cln26 H3K27ac biol rep 1
GSM6597843
DLD-1 cln26 H3K27ac biol rep 2
GSM6597844
DLD-1 cln32 H3K4me3 biol rep 1
GSM6597845
DLD-1 cln32 H3K4me3 biol rep 2
GSM6597846
DLD-1 cln32 H3K27me3 biol rep 1
GSM6597847
DLD-1 cln32 H3K27me3 biol rep 2
GSM6597848
DLD-1 cln32 H3K27ac biol rep 1
GSM6597849
DLD-1 cln32 H3K27ac biol rep 2
GSM6597850
DLD-1 cln36 H3K4me3 biol rep 1
GSM6597851
DLD-1 cln36 H3K4me3 biol rep 2
GSM6597852
DLD-1 cln36 H3K27me3 biol rep 1
GSM6597853
DLD-1 cln36 H3K27me3 biol rep 2
GSM6597854
DLD-1 cln36 H3K27ac biol rep 1
GSM6597855
DLD-1 cln36 H3K27ac biol rep 2
GSM6598147
RPE-1 p53KO DMSO H3K4me3 biol rep 1
GSM6598148
RPE-1 p53KO DMSO H3K4me3 biol rep 2
GSM6598149
RPE-1 p53KO Reversine H3K4me3 biol rep 1
GSM6598150
RPE-1 p53KO Reversine H3K4me3 biol rep 2
GSM6598151
RPE-1 p53KO LMB2OE DMSO H3K4me3 biol rep 1
GSM6598152
RPE-1 p53KO LMB2OE DMSO H3K4me3 biol rep 2
GSM6598153
RPE-1 p53KO LMB2OE Reversine H3K4me3 biol rep 1
GSM6598154
RPE-1 p53KO LMB2OE Reversine H3K4me3 biol rep 2
GSM6598155
RPE-1 p53KO DMSO H3K27me3 biol rep 1
GSM6598156
RPE-1 p53KO DMSO H3K27me3 biol rep 2
GSM6598157
RPE-1 p53KO Reversine H3K27me3 biol rep 1
GSM6598158
RPE-1 p53KO Reversine H3K27me3 biol rep 2
GSM6598159
RPE-1 p53KO LMB2OE DMSO H3K27me3 biol rep 1
GSM6598160
RPE-1 p53KO LMB2OE DMSO H3K27me3 biol rep 2
GSM6598161
RPE-1 p53KO LMB2OE Reversine H3K27me3 biol rep 1
GSM6598162
RPE-1 p53KO LMB2OE Reversine H3K27me3 biol rep 2
GSM6598163
RPE-1 p53KO DMSO H3K27ac biol rep 1
GSM6598164
RPE-1 p53KO DMSO H3K27ac biol rep 2
GSM6598165
RPE-1 p53KO Reversine H3K27ac biol rep 1
GSM6598166
RPE-1 p53KO Reversine H3K27ac biol rep 2
GSM6598167
RPE-1 p53KO LMB2OE DMSO H3K27ac biol rep 1
GSM6598168
RPE-1 p53KO LMB2OE DMSO H3K27ac biol rep 2
GSM6598169
RPE-1 p53KO LMB2OE Reversine H3K27ac biol rep 1
GSM6598170
RPE-1 p53KO LMB2OE Reversine H3K27ac biol rep 2
GSM6598773
MN intact H3K4me3 biol rep 1
GSM6598774
MN intact H3K4me3 biol rep 2
GSM6598775
MN ruptured H3K4me3 biol rep 1
GSM6598776
MN ruptured H3K4me3 biol rep 2
GSM6598777
PN H3K4me3 biol rep 1
GSM6598778
PN H3K4me3 biol rep 2
GSM6600595
RPE-1 Chr4 misseg control biol rep 1
GSM6600596
RPE-1 Chr4 misseg control biol rep 2
GSM6600597
RPE-1 Chr4 misseg control biol rep 3
GSM6600598
RPE-1 Chr4 misseg A biol rep 1
GSM6600599
RPE-1 Chr4 misseg A biol rep 2
GSM6600600
RPE-1 Chr4 misseg A biol rep 3
GSM6600601
RPE-1 Chr4 misseg B biol rep 1
GSM6600602
RPE-1 Chr4 misseg B biol rep 2
GSM6600603
RPE-1 Chr4 misseg B biol rep 3
GSM6600618
HCT116 Parental Control ATAC-Seq Biol Rep 1
GSM6600619
HCT116 Parental Control ATAC-Seq Biol Rep 2
GSM6600620
HCT116 5-17 ATAC-Seq
GSM6600621
HCT116 5-18 ATAC-Seq
GSM6600622
HCT116 13-2 ATAC-Seq
GSM6600623
HCT116 18-2 ATAC-Seq
GSM6600624
HCT116 21-1 ATAC-Seq
GSM6605927
4T1 dnMCAK ATAC biol rep 1
GSM6605928
4T1 dnMCAK ATAC biol rep 2
GSM6605929
4T1 dnMCAK ATAC biol rep 3
GSM6605930
4T1 KIF2C ATAC biol rep 1
GSM6605931
4T1 KIF2C ATAC biol rep 2
GSM6605932
4T1 KIF2C ATAC biol rep 3
This SuperSeries is composed of the following SubSeries:
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GSE186584
Epigenetic dysregulation from chromosomal transit in micronuclei [4T1 MN ATAC-Seq]
GSE186585
Epigenetic dysregulation from chromosomal transit in micronuclei [RPE-1 ATAC-Seq]
GSE188346
Epigenetic dysregulation from chromosomal transit in micronuclei [DLD-1 ATAC-seq]
GSE188644
Epigenetic dysregulation from chromosomal transit in micronuclei [RPE-1 RNA-Seq]
GSE214012
Epigenetic dysregulation from chromosomal transit in micronuclei [DLD-1 CUT&RUN]
GSE214040
Epigenetic dysregulation from chromosomal transit in micronuclei [RPE-1 CUT&RUN]
GSE214080
Epigenetic dysregulation from chromosomal transit in micronuclei [MN CUT&RUN]
GSE214175
Epigenetic dysregulation from chromosomal transit in micronuclei [Chr4 ATAC-seq]
GSE214178
Epigenetic dysregulation from chromosomal transit in micronuclei [MMCT ATAC-seq]
GSE214448
Epigenetic dysregulation from chromosomal transit in micronuclei [ATAC-Seq]
Relations
BioProject
PRJNA774649
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SOFT
MINiML formatted family file(s)
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TXT
Supplementary file
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GSE186589_RAW.tar
20.6 Gb
(http)
(custom)
TAR (of BED, BIGWIG, BW, TDF, TXT)
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