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Series GSE190334 Query DataSets for GSE190334
Status Public on Jun 01, 2022
Title Insulin secretion deficits in a Prader-Willi syndrome β-cell model are associated with a concerted downregulation of multiple endoplasmic reticulum chaperones [RNA-seq]
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary A Prader-willi syndrome (PWS) model of β-cell dysfunction
 
Overall design Total RNA expression analysis of 3 control and 3 PWS clonal genome-edited INS1 lines
Web link https://doi.org/10.1101/2021.12.16.473032
 
Contributor(s) Nicholls RD, Koppes EA
Citation(s) 37068109
Submission date Dec 07, 2021
Last update date May 12, 2023
Contact name Erik Koppes
E-mail(s) koppesea@upmc.edu
Organization name University of Pittsburgh
Department MWRI
Street address 204 Craft Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (6)
GSM5719986 INS-1 line 5-9 (Control 1)
GSM5719987 INS-1 line 2 (Control 2)
GSM5719988 INS-1 line 16 (Control 3)
This SubSeries is part of SuperSeries:
GSE190337 Insulin secretion deficits in a Prader-Willi syndrome β-cell model are associated with a concerted downregulation of multiple endoplasmic reticulum chaperones
Relations
BioProject PRJNA786768
SRA SRP349599

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190334_CustomAnnot.gtf.gz 1.4 Kb (ftp)(http) GTF
GSE190334_INS1_PWS_res_all_v98cust_RSEM_DESEQ2.csv.gz 2.1 Mb (ftp)(http) CSV
GSE190334_INS1_PWS_res_all_v98cust_UnionNone.csv.gz 1.9 Mb (ftp)(http) CSV
GSE190334_INS1_PWS_res_all_wNormcounts_v98cust_UnionAll.csv.gz 2.1 Mb (ftp)(http) CSV
GSE190334_hINStg.fa.gz 2.2 Kb (ftp)(http) FA
GSE190334_mINS2tg.fa.gz 2.2 Kb (ftp)(http) FA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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