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Series GSE190585 Query DataSets for GSE190585
Status Public on Dec 16, 2021
Title Pathogen infection and cholesterol deficiency activate the C. elegans p38 immune pathway through a TIR-1/SARM1 phase transition
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary Intracellular signaling regulators can be concentrated into membrane-free, higher-ordered protein assemblies to initiate protective responses during stress — a process known as phase transition. Here, we show that a phase transition of the Caenorhabditis elegans Toll/interleukin-1 receptor domain protein (TIR-1), an NAD+ glycohydrolase homologous to mammalian sterile alpha and TIR motif-containing 1 (SARM1), underlies p38 PMK-1 immune pathway activation in C. elegans intestinal epithelial cells. Through visualization of fluorescently labeled TIR-1/SARM1 protein, we demonstrate for the first time that physiologic stresses, both pathogen and non-pathogen, induce multimerization of TIR-1/SARM1 into visible puncta within intestinal epithelial cells. In vitro enzyme kinetic analyses revealed that, like mammalian SARM1, the NAD+ glycohydrolase activity of C. elegans TIR-1 is dramatically potentiated by protein oligomerization and a phase transition. Accordingly, C. elegans with genetic mutations that specifically block either multimerization or the NAD+ glycohydrolase activity of TIR-1/SARM1 fail to induce p38 PMK phosphorylation, are unable to increase immune effector expression, and are dramatically susceptible to bacterial infection. Finally, we demonstrate that low cholesterol stress causes TIR-1/SARM1 to oligomerize into puncta in intestinal epithelial cells and engages its NAD+ glycohydrolase activity, which increases p38 PMK-1 phosphorylation, and primes immune effector induction in a manner that leads to reduced pathogen accumulation in the intestine during a subsequent infection. These data reveal a new adaptive response that allows a metazoan host to anticipate pathogen threats during micronutrient deprivation, a time of relative susceptibility to infection. Thus, a phase transition of TIR-1/SARM1 as a prerequisite for its NAD+ glycohydrolase activity is strongly conserved across millions of years of evolution and is essential for diverse physiological processes in multiple cell types.
 
Overall design RNA-seq of uninfected C. elegans wild-type (N2) animals grown on either 0 μg/mL or 5 μg/mL cholesterol supplemented medium.
 
Contributor(s) Peterson ND, Pukkila-Worley R
Citation(s) 35098926
Submission date Dec 09, 2021
Last update date Mar 18, 2022
Contact name Read Pukkila-Worley
E-mail(s) read.pukkila-worley@umassmed.edu
Organization name University of Massachusetts Medical School
Department Medicine
Lab Read Pukkila-Worley
Street address 55 N Lake Ave
City Worcester
State/province Massachusetts
ZIP/Postal code 01655
Country USA
 
Platforms (1)
GPL25145 BGISEQ-500 (Caenorhabditis elegans)
Samples (6)
GSM5725989 N2_0chol_1
GSM5725990 N2_0chol_2
GSM5725991 N2_0chol_3
Relations
BioProject PRJNA787602
SRA SRP350058

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Supplementary file Size Download File type/resource
GSE190585_RAW.tar 2.9 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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