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Series GSE190634 Query DataSets for GSE190634
Status Public on Aug 08, 2022
Title Transcriptomics of cytokine-treated human colonic epithelial organoids
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Mapping of transcriptional changes elicited by cytokines mediating canonical immune responses in human colonic organoids
 
Overall design Colonic organoids were derived from crypts isolated from biopsies of four healthy individuals. They were then treated with TNF, IFNG, IL17A, IL22 and combination of IL17 and IL22 for 24 hours.
 
Contributor(s) Pavlidis P, Tsakmaki A, Cozzetto D, Bewick G, Powell N
Citation(s) 36192482, 36170836
Submission date Dec 10, 2021
Last update date Nov 07, 2022
Contact name Nick Powell
E-mail(s) npowell@ic.ac.uk
Organization name Imperial College London
Department Department of Metabolism, Digestion and Reproduction
Street address Du Cane Road
City London
ZIP/Postal code W12 0NN
Country United Kingdom
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (24)
GSM5726840 Untreated colonoid donor 1 [Control_1]
GSM5726841 Untreated colonoid donor 2 [Control_2]
GSM5726842 Untreated colonoid donor 3 [Control_3]
Relations
BioProject PRJNA787886
SRA SRP350252

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190634_read_counts.txt.gz 1015.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
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