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Series GSE190660 Query DataSets for GSE190660
Status Public on Aug 05, 2023
Title Methylation studies in the vervet monkey
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Chlorocebus sabaeus
Experiment type Methylation profiling by array
Summary DNA methylation data from vervet cerebral cortex, blood, and liver using highly conserved mammalian CpGs represented on the mammalian methylation array (HorvathMammalMethylChip40).
We selected a total of 240 samples representing the entire vervet lifespan, from neonatal to senile stages: 144 samples from the peripheral blood, 48 samples from the liver, and 48 samples from the cortical brain area BA10.
 
Overall design n=240 samples/arrays. Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium
 
Contributor(s) Horvath S, Jasinska AJ
Citation(s) 34487267, 37563227, 38848365
Submission date Dec 10, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (240)
GSM5727373 Sample1.Vervet.202897220097_R01C01
GSM5727374 Sample2.Vervet.202897220097_R02C01
GSM5727375 Sample3.Vervet.202897220097_R03C01
Relations
BioProject PRJNA787932

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190660_Explanation_of_characteristic_variables.docx.gz 12.5 Kb (ftp)(http) DOCX
GSE190660_RAW.tar 181.3 Mb (http)(custom) TAR (of IDAT)
GSE190660_README.docx 12.9 Kb (ftp)(http) DOCX
GSE190660_datBetaNormalized.csv.gz 69.7 Mb (ftp)(http) CSV
Processed data are available on Series record

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