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Series GSE190663 Query DataSets for GSE190663
Status Public on Aug 05, 2023
Title Methylation studies in common marmoset
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Callithrix jacchus
Experiment type Methylation profiling by array
Summary DNA methylation data from common marmosets (Callithrix jacchus) profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species.
Rapamycin study in a subset of animals.
 
Overall design n=96 blood samples/arrays. Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium
 
Contributor(s) Horvath S, Salmon AB
Citation(s) 34482522, 37563227, 38848365
Submission date Dec 10, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (96)
GSM5728029 Sample1.Common marmoset.203531420014_R01C01
GSM5728030 Sample2.Common marmoset.203531420014_R02C01
GSM5728031 Sample3.Common marmoset.203531420014_R03C01
Relations
BioProject PRJNA787940

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190663_Explanation_of_characteristic_variables.docx.gz 12.6 Kb (ftp)(http) DOCX
GSE190663_RAW.tar 71.1 Mb (http)(custom) TAR (of IDAT)
GSE190663_README.docx 12.9 Kb (ftp)(http) DOCX
GSE190663_datBetaNormalized.csv.gz 28.0 Mb (ftp)(http) CSV
Processed data are available on Series record
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