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Series GSE190730 Query DataSets for GSE190730
Status Public on Dec 31, 2022
Title Base-resolution DNA methylation maps of little skate (Leucoraja erinacea)
Organism Leucoraja erinacea
Experiment type Methylation profiling by high throughput sequencing
Summary Using MetylC-seq we investigated single-base resolution methylomes of embryonic and adult pelvic and pectoral fins of little skate.
 
Overall design MethylC-seq was perfomred on st31 pelvic and pectoral as well as adult pelvic and pectoral fins of little skate.
 
Contributor(s) Skvortsova K, Bogdanovic O
Citation(s) 37046085
Submission date Dec 12, 2021
Last update date Apr 21, 2023
Contact name Ksenia Skvortsova
E-mail(s) k.skvortsova@garvan.org.au
Phone 478135210
Organization name Garvan Institute
Department Genomics and Epigenetics
Lab Developmental Epigenomics
Street address 384 Victoria St, Darlinghurst
City Sydney
State/province NSW
ZIP/Postal code 2010
Country Australia
 
Platforms (2)
GPL31064 Illumina NovaSeq 6000 (Leucoraja erinacea)
GPL31065 HiSeq X Ten (Leucoraja erinacea)
Samples (4)
GSM5729870 skate_st31_pectoral_fin_MethylCseq
GSM5729871 skate_st31_pelvic_fin_MethylCseq
GSM5729872 skate_adult_pectoral_fin_MethylCseq
Relations
BioProject PRJNA788279

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190730_RAW.tar 1002.4 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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