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Series GSE190840 Query DataSets for GSE190840
Status Public on Dec 15, 2021
Title The Renin-Angiotensin System, High Inherent Aerobic Capacity, and Low Breast Cancer Risk
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: Physical activity is associated with reduced breast cancer risk. Aerobic capacity, which is the ability to generate and use energy on a sustained basis, has been hypothesized as a mechanism linking physical activity and cancer. Using selectively bred rats with distinctly different inherent aerobic capacity (IAC) in concert with a well-characterized model of breast cancer, we have previously reported that high IAC is protective against chemically induced mammary carcinogenesis. The mechanism(s) by which differing IAC confers effects on cells that reside in the mammary gland is unknown.
Methods: To address this knowledge gap, RNA sequence analysis was performed on skeletal muscle, uninvolved mammary gland, and mammary carcinoma from rats of low or high IAC status.
Results: Investigation of effects on upstream regulators led to a focus on the role of the renin-angiotensin system (RAS) in mediating effects on downstream targets relevant to the development of breast cancer. Patterns of RAS gene expression in skeletal muscle and mammary gland of high versus low IAC were consistent with counter-regulatory RAS activity signaling promoting anti-cancer biological functions while an opposite expression pattern of these transcripts was observed in tumor tissue.
Conclusions: This study found a biologically plausible heritable relationship linking mechanisms associated with aerobic capacity and the development of breast cancer. Through RNA-seq analyses, we identified AGT as a biomarker pointing to differences in the regulation of RAS as a candidate mediator linking aerobic capacity and breast cancer.
 
Overall design RNA sequence analysis was performed on skeletal muscle, uninvolved mammary gland, and mammary carcinoma from rats of low or high IAC status.
 
Contributor(s) Fitzgerald VK, Whiteman AM, McGinley JN, King DC, Osborne Nishimura E, Thompson HJ
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Submission date Dec 13, 2021
Last update date Dec 15, 2021
Contact name Henry J Thompson
E-mail(s) henry.thompson@colostate.edu
Organization name Colorado State University
Lab Cancer Prevention Laboratory
Street address 1173 Campus Delivery
City Fort Collins
State/province CO
ZIP/Postal code 80523-1173
Country USA
 
Platforms (1)
GPL25947 Illumina NovaSeq 6000 (Rattus norvegicus)
Samples (58)
GSM5732748 1_Tumor
GSM5732749 2_Tumor
GSM5732750 3_Tumor
Relations
BioProject PRJNA788552

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190840_RAW.tar 125.9 Mb (http)(custom) TAR (of TXT)
GSE190840_Raw_gene_counts_matrix.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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