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Series GSE192585 Query DataSets for GSE192585
Status Public on Mar 31, 2022
Title Single cell RNA-seq of brain macrophages and microglia in mice lacking Notch3
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In this single cell RNAseq analysis, we compared brain macrophage and microglia transcriptomes from Notch3 knock out and control.
 
Overall design Brain single cells from Notch3 knockout and control were sorted into 384-well-plates and RNA-sequenced using the SmartSeq2 method
 
Contributor(s) Del Gaudio F, Lendahl U
Citation(s)
  • Masuda T, Amann L, Monaco G, Sankowski R et al. Specification of CNS macrophage subsets occurs postnatally in defined niches. Nature 2022 Apr;604(7907):740-748. PMID: 35444273
Submission date Dec 24, 2021
Last update date May 11, 2022
Contact name L. H.
Organization name Uppsala University
Street address Dag Hammarskjölds Väg 20
City Uppsala
ZIP/Postal code 751 85
Country Sweden
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (629)
GSM5752058 plate_056s_A11_S81_L004
GSM5752059 plate_056s_A6_S41_L004
GSM5752060 plate_056s_A8_S57_L004
Relations
BioProject PRJNA792144

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE192585_N3_PVM_MG_raw_reads_counts_matrix202112.txt.gz 4.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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