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Series GSE192979 Query DataSets for GSE192979
Status Public on Jan 26, 2022
Title mRNA sequencing of perilesional cortex and ipsilateral thalamus at 3-months after lateral fluid-percussion injury or sham-operation
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary At 3-months after after traumatic brain injury, messenger RNA sequencing was performed on samples from ipsilateral thalamus and perilesional cortex of selected rats with the chronic inflammatory endophenotype, and sham-operated controls.
 
Overall design Messenger RNA sequencing of perilesional cortex and ipsilateral thalamus at 3-months after lateral fluid-percussion injury (n=6) or sham-operation (n=6).
 
Contributor(s) Puhakka N, Gupta SD, Vuokila N, Pitkänen A
Citation(s) 35052815
https://doi.org/10.3390/biomedicines10010136
Submission date Jan 04, 2022
Last update date Jan 31, 2022
Contact name Noora Puhakka
E-mail(s) noora.puhakka@uef.fi
Organization name University of Eastern Finland
Department A.I. Virtanen Institute for Molecular Sciences
Street address Neulaniementie 2, P.O.B. 1627
City Kuopio
ZIP/Postal code 70211
Country Finland
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (24)
GSM5770076 TBI_Cortex_c22 [RNA-seq]
GSM5770077 TBI_Cortex_c24 [RNA-seq]
GSM5770078 Control_Cortex_c26 [RNA-seq]
This SubSeries is part of SuperSeries:
GSE192981 mRNA-seq and miRNA-seq of perilesional cortex and ipsilateral thalamus at 3-months after lateral fluid-percussion injury or sham-operation
Relations
BioProject PRJNA794059

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE192979_Cortex_gene_exp.diff.gz 1.5 Mb (ftp)(http) DIFF
GSE192979_Thalamus_gene_exp.diff.gz 1.5 Mb (ftp)(http) DIFF
GSE192979_count_table.csv.gz 2.4 Mb (ftp)(http) CSV
GSE192979_genes.attr_table.txt.gz 887.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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