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Series GSE193370 Query DataSets for GSE193370
Status Public on Feb 27, 2023
Title wdr33 iCLIP-seq in control and U1 AMO-treated HeLa cells
Organism Homo sapiens
Experiment type Other
Summary To understand the effect of U1 AMO treatment on wdr33 binding profile , we carried out CstF64 iCLIP-seq experiments in HeLa cells treated with either control or U1 AMO.
 
Overall design Control and U1 AMO were transfected into HeLa cells,after 12 hour. wdr33 iCLIP-seq(s) were carried out using the standard iCLIP-seq protocol (König J et al. 2010)
 
Contributor(s) Deng Y, Ran Y, Shi J, Yao C
Citation(s) 37224962
Submission date Jan 10, 2022
Last update date May 29, 2023
Contact name chengguo yao
E-mail(s) yaochguo@mail.sysu.edu.cn
Organization name sysu
Department school of medicine
Street address No. 74 zhongshan 2rd road
City guangzhou
ZIP/Postal code 510080
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM5798245 control AMO-repeat 1 wdr33iCLIP-seq
GSM5798246 control AMO-repeat 2 wdr33iCLIP-seq
GSM5798247 U1 AMO-repeat 1 wdr33iCLIP-seq
This SubSeries is part of SuperSeries:
GSE192943 The U1 antisense morpholino oligonucleotide (AMO) disrupts U1 snRNP structure to promote intronic PCPA modification of pre-mRNAs
Relations
BioProject PRJNA795973

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE193370_RAW.tar 15.8 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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