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| Status |
Public on Jan 21, 2022 |
| Title |
A Single Cell Transcriptome Atlas of The Domestic Pig |
| Organism |
Sus scrofa domesticus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
By leveraging single-cell/nuclei RNA sequencing, we generate the first single-cell transcriptome atlas of over 200,000 pig cells from 20 tissues/organs.
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| Overall design |
In this study, we report the generation of a single-cell transcriptome atlas of 222,526 cells across twenty tissues of the domestic pig by using scRNA-seq and single-nuclei RNA-sequencing (snRNAseq).
Please note that the processed data files have been replaced and 3 samples (GSM6605687-GSM6605689) added on Sep 29, 2022.
In the previous files, the mitochondria gene name in the gene matrix were with the "MT-" prefix. To be consistent with the pig Sus_scrofa11.1 genome assembly, the matrix has been updated with "MT-" prefix removed for the pig mitochondria genes.
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| Contributor(s) |
Lin L, Chen D, Luo Y, Wang F |
| Citation(s) |
35750885 |
| |
| Submission date |
Jan 19, 2022 |
| Last update date |
Nov 29, 2022 |
| Contact name |
Lin Lin |
| E-mail(s) |
lin.lin@biomed.au.dk
|
| Organization name |
Aarhus University
|
| Department |
Department of Biomedicine
|
| Street address |
Høegh-Guldbergs Gade 10
|
| City |
Aarhus |
| ZIP/Postal code |
8000 |
| Country |
Denmark |
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| Platforms (2) |
| GPL31246 |
DNBSEQ-G400 (Sus scrofa domesticus) |
| GPL31247 |
DNBSEQ-T7 (Sus scrofa domesticus) |
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| Samples (45)
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| Relations |
| BioProject |
PRJNA798674 |
| SRA |
SRP355775 |
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