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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 03, 2022 |
| Title |
The helicase domain of Dicer ensures essential accuracy of miRNA biogenesis in mice |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
Dicer ribonucleases, which generate small RNAs for the RNA interference (RNAi) and microRNA (miRNA) pathways, often have an N-terminal DExD helicase subdomain (also called HEL1). In the mammalian Dicer, HEL1 inhibits RNAi while it appears unnecessary for miRNA biogenesis. To determine its functional significance, we genetically eliminated HEL1 from Dicer in mice. We observed embryonic growth retardation, defects in the cardiopulmonary system, and perinatal lethality. HEL1 suppresses biogenesis of mirtrons, a non-canonical low-abundant class of miRNAs, and is required for high-fidelity cleavage and strand selection during biogenesis of canonical miRNAs. The HEL1 domain itself is essential rather than its helicase activity, because mutations of critical catalytic amino acids do not affect mouse viability or fertility and have minimal impact on miRNA biogenesis. Therefore, HEL1 is a critical structural component of the mammalian Dicer, supporting its role of a conserved structural “mold” that ensures high-fidelity processing and adaptive evolution of mammalian miRNA precursors.
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| Overall design |
Refer to individual Series
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| Citation(s) |
36332606 |
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| Submission date |
Feb 07, 2022 |
| Last update date |
Sep 15, 2023 |
| Contact name |
Filip Horvat |
| E-mail(s) |
filip.horvat@img.cas.cz
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| Organization name |
Institute of Molecular Genetics of the ASCR
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| Lab |
Laboratory of Epigenetic Regulations
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| Street address |
Videnska 1083
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| City |
Prague |
| ZIP/Postal code |
14220 |
| Country |
Czech Republic |
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| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (27)
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| GSM5870267 |
s-E15.5-GNTHOM-3 |
| GSM5870268 |
s-E15.5-GNTHOM-4 |
| GSM5870269 |
s-E15.5-GNTHOM-9 |
| GSM5870270 |
s-E15.5-WT-1 |
| GSM5870271 |
s-E15.5-WT-6 |
| GSM5870272 |
s-E15.5-WT-8B |
| GSM5870273 |
s-E15.5-XHOM-10B-r2 |
| GSM5870274 |
s-E15.5-XHOM-2 |
| GSM5870275 |
s-E15.5-XHOM-3B |
| GSM5870276 |
s-E15.5-XHOM-4 |
| GSM5870277 |
s-E15.5-XHOM-7B |
| GSM5870282 |
s, ESC, WT+MosIR, RS7.1 |
| GSM5870283 |
s, ESC, WT+MosIR, RS7.2 |
| GSM5870284 |
s, ESC, WT+MosIR, RS7.3 |
| GSM5870285 |
s, ESC, XHOM+MosIR, RS10.1 |
| GSM5870286 |
s, ESC, XHOM+MosIR, RS10.2 |
| GSM5870287 |
s, ESC, XHOM+MosIR, RS10.3 |
| GSM5870288 |
s, ESC, XHOM&PKRnull+MosIR, RSP.1 |
| GSM5870289 |
s, ESC, XHOM&PKRnull+MosIR, RSP.2 |
| GSM5870290 |
s, ESC, XHOM&PKRnull+MosIR, RSP.3 |
| GSM5870291 |
l, ESC, WT, RS7.1 |
| GSM5870292 |
l, ESC, WT, RS7.2 |
| GSM5870293 |
l, ESC, XHOM, RS10.1 |
| GSM5870294 |
l, ESC, XHOM, RS10.2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE196305 |
The helicase domain of Dicer ensures essential accuracy of miRNA biogenesis in mice |
| GSE196306 |
The helicase domain of Dicer ensures essential accuracy of miRNA biogenesis in mice |
| GSE196308 |
The helicase domain of Dicer ensures essential accuracy of miRNA biogenesis in mice |
| GSE196309 |
The helicase domain of Dicer ensures essential accuracy of miRNA biogenesis in mice |
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| Relations |
| BioProject |
PRJNA804233 |
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