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Series GSE198462 Query DataSets for GSE198462
Status Public on Mar 31, 2022
Title Next generation RNAseq from human hepatic sinusoidal endothelial cells (EC) and mouse sinusoidal EC plated on soft vs hard gels
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary next generation RNAseq data from human hepatic sinusoidal endothelial cells and primary mouse sinusoidal endothelial cells plated on soft vs hard gels reveals the chemokine CXCL1 being among the top up-regulated genes from granulocyte and agranulocyte migration/diapedesis pathway.
 
Overall design next generation RNAsequencing from human hepatic sinusoidal endothelial cells (EC) and mouse sinusoidal EC plated on soft vs hard gels.
 
Contributor(s) Shah VH, Yaqoob U
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Submission date Mar 11, 2022
Last update date Mar 31, 2022
Contact name Aditya Bhagwate
E-mail(s) bhagwate.adityavijay@mayo.edu
Organization name Mayo Clinic
Street address 200 1st Street SW
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
 
Platforms (2)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (18)
GSM5949162 49_HHSEC_SOFT_6h_1
GSM5949163 50_HHSEC_SOFT_6h_2
GSM5949164 51_HHSEC_SOFT_6h_3
Relations
BioProject PRJNA815343

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE198462_GeneCount_human.tsv.gz 1.8 Mb (ftp)(http) TSV
GSE198462_GeneCount_mouse.tsv.gz 608.4 Kb (ftp)(http) TSV
GSE198462_HHSEC_SOFT_12h_vs_HHSEC_HARD_12h.diff.xls.gz 2.7 Mb (ftp)(http) XLS
GSE198462_HHSEC_SOFT_6h_vs_HHSEC_HARD_6h.diff.xls.gz 2.7 Mb (ftp)(http) XLS
GSE198462_MSEC_SOFT_12h_vs_MSEC_HARD_12h.diff.xls.gz 1.3 Mb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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