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Series GSE198495 Query DataSets for GSE198495
Status Public on Sep 21, 2022
Title DNA methylation profiling of umbilical cord blood cells from Trypanosoma cruzi infected and uninfected mothers
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of umbilical cord blood DNA samples using the Illumina Infinium MethylationEPIC array (approximately 850,000 CpGs). Samples included cord blood samples from infants born to women with (exposed) and without (control) infection with Trypanosoma cruzi parasites, to test for a potential epigenetic effect of in utero exposure to maternal infection.
 
Overall design bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip
 
Contributor(s) Desale H, Buekens P, Alger J, Cafferata ML, Harville EW, Herrera C, Truyens C, Dumonteil E
Citation(s)
  • Desale H, Buekens P, Alger J, Cafferata ML et al. Epigenetic signature of exposure to maternal Trypanosoma cruzi infection in cord blood cells from uninfected newborns. Epigenomics 2022 Aug;14(15):913-927. PMID: 36039408
Submission date Mar 12, 2022
Last update date Sep 22, 2022
Contact name Eric Dumonteil
E-mail(s) edumonte@tulane.edu
Organization name Tulane University
Department Tropical Medicine
Street address 1440 Canal st.
City New Orleans
State/province LA
ZIP/Postal code 70115
Country USA
 
Platforms (1)
GPL23976 Illumina Infinium HumanMethylation850 BeadChip
Samples (63)
GSM5949503 genomic DNA from Cord Blood sample 490006_VP_NEG
GSM5949504 genomic DNA from Cord Blood sample 490007_TI_NEG
GSM5949505 genomic DNA from Cord Blood sample 490012_DO_NEG
Relations
BioProject PRJNA815645

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE198495_RAW.tar 888.6 Mb (http)(custom) TAR (of IDAT)
GSE198495_control_vs_expo_normalized_beta_values.csv.gz 217.7 Mb (ftp)(http) CSV
Processed data included within Sample table
Processed data are available on Series record

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