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Series GSE199109 Query DataSets for GSE199109
Status Public on Mar 24, 2022
Title The licorice metabolite enoxolone attenuates Clostridioides difficile pathophysiology by corrupting its metabolic and toxin production networks
Organism Clostridioides difficile
Experiment type Expression profiling by high throughput sequencing
Summary Toxins TcdA and TcdB are the main virulence factors of Clostridioides difficile, a leading cause of hospital-acquired diarrhea. We investigated the therapeutic potential of inhibiting the biosynthesis of TcdA and TcdB. Accordingly, screening of structurally diverse phytochemicals with medicinal properties identified 18b-glycyrrhetinic acid (enoxolone) as an inhibitor of TcdA and TcdB biosynthesis. Enoxolone also inhibited sporulation. In a CDI colitis model, enoxolone when combined with vancomycin protected mice from becoming moribund and the combination was more effective than vancomycin alone, a standard of care antibiotic for CDI. While enoxolone alone reduced the in vivo load of toxins, the monotherapy did not protect mice from CDI. Affinity based proteomics identified ATP synthase subunit alpha (AtpA) and adenine deaminase (Ade) as possible molecular targets for enoxolone. Silencing of mRNA for Ade and AtpA also reduced toxin biosynthesis, while molecular interaction analysis showed that enoxolone directly bound to Ade. Ade converts adenine to hypoxanthine as an early step in the purine salvage pathway. Metabolomics revealed enoxolone caused cells to accumulate adenosine and deplete hypoxanthine and ATP. Accordingly, supplementation with hypoxanthine partly restored toxin production. Enoxolone also impacted phosphate metabolism by reducing the amounts of cellular phosphate. Thus, supplementation with triethyl phosphate as a source of phosphate also partly restored toxin production. When hypoxanthine and triethyl phosphate were combined, toxin production was fully restored in the presence of enoxolone. Taken together, studies with enoxolone revealed metabolic pathways that affect C. difficile toxin production and could represent potential anti-virulence drug targets.
 
Overall design mRNA profiles of C. difficile R20291 upon exposure to enoxolone (16 µM) or DMSO for 30 minutes.
 
Contributor(s) Hurdle JG, Marreddy RK, Lee RE, Phelps GA
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Submission date Mar 21, 2022
Last update date Mar 24, 2022
Contact name Richard Lee
E-mail(s) richard.lee@stjude.org
Phone 9015956617
Organization name St. Jude Children's Research Hospital
Department Department of Chemical Biology and Therapeutics
Lab Lee
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL30071 Illumina NovaSeq 6000 (Clostridioides difficile)
Samples (6)
GSM5964507 DMSO_1
GSM5964508 DMSO_2
GSM5964509 DMSO_3
Relations
BioProject PRJNA818416

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE199109_CDR20291_ENXvDMSO_DESeq.txt.gz 134.3 Kb (ftp)(http) TXT
GSE199109_CountsTable_ControlvEnoxoloneTreated.txt.gz 94.7 Kb (ftp)(http) TXT
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Processed data are available on Series record

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