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Series GSE19912 Query DataSets for GSE19912
Status Public on Apr 07, 2010
Title A high-resolution transcriptome map of Ectocarpus siliculosus
Organism Ectocarpus siliculosus
Experiment type Expression profiling by genome tiling array
Summary Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related. These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. The brown algae are also important because they are one of only a very small number of eukaryotic lineages that have evolved complex multicellularity. This work used whole genome tiling array approach to generate a comprehensive transcriptome map of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for the brown algae.
Keywords: high-resolution tiling array, brown algae, ectocarpus
Overall design The slides were hybridised with two, labelled samples: 1) a mixture of labelled cDNA corresponding to RNA samples from mature sporophytes and gametophytes and from immature sporophytes stressed either in high salt medium or by addition of hydrogen peroxide and 2) genomic DNA as a control.
Contributor(s) Samanta MP, Scornet D, Cock JM
Citation(s) 20520714
Submission date Jan 15, 2010
Last update date Jul 24, 2013
Contact name Manoj Samanta
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
Platforms (8)
GPL9931 Ectocarpus siliculosus tiling array ChIP1
GPL9932 Ectocarpus siliculosus tiling array ChIP2
GPL9933 Ectocarpus siliculosus tiling array ChIP3
Samples (16)
GSM497625 Es1, Ectocarpus siliculosus tiling array Chip1
GSM497626 Es2, Ectocarpus siliculosus tiling array Chip1
GSM497627 Es3, Ectocarpus siliculosus tiling array Chip2
BioProject PRJNA122093

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19912_RAW.tar 194.1 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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