NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE200158 Query DataSets for GSE200158
Status Public on Apr 04, 2024
Title Epigenetic differences in long non-coding RNA expression in Finnish and Russian Karelia teenagers with contrasting risk of allergy and asthma
Organism Homo sapiens
Experiment type Expression profiling by array
Non-coding RNA profiling by array
Summary The objective of the study was to investigate long non-coding RNA (lncRNA) expression profiles of blood mononuclear cells (PBMC), to identify lncRNAs that act at the interphase of microbiome-mediated immune homeostasis in allergy/asthma.
 
Overall design Venous blood samples were collected from healthy and asthmatic individuals from Finland (n=69) and Russia (n=75) yielding altogether 144 study subjects. PBMCs were separated and totRNA extracted for microarray analyses.
 
Contributor(s) Ndika J, Karisola P, Lahti V, Fyhrquist N, Laatikainen T, Haahtela T, Alenius H
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 04, 2022
Last update date Apr 04, 2024
Contact name Piia Karisola
E-mail(s) piia.karisola@helsinki.fi
Phone +358503635136
Organization name University of Helsinki
Department Medical Faculty, Human Microbes Research Program Unit
Street address Haartmaninkatu 3
City Helsinki
State/province Southern Finland
ZIP/Postal code 00290
Country Finland
 
Platforms (1)
GPL20844 Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version]
Samples (144)
GSM6016154 Russian_healthy_3002
GSM6016155 Russian_healthy_3004
GSM6016156 Russian_healthy_3005
Relations
BioProject PRJNA823366

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200158_Ndika_Expression_Matrix_Corrected_2020-11-05-2_with_Target_ID_and_Gene_Annotations_04042022.xlsx 55.2 Mb (ftp)(http) XLSX
GSE200158_RAW.tar 859.3 Mb (http)(custom) TAR (of TXT)
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap