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GEO accession:
Series GSE200875
Query DataSets for GSE200875
Status
Public on Jun 23, 2023
Title
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development
Organism
Drosophila melanogaster
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://www.nature.com/articles/s41467-023-41408-1
Citation(s)
37735176
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
DP2 OD004561
Investigating Developmental Potential Based on Genome-wide Chromatin Status
STOWERS INSTITUTE FOR MEDICAL RESEARCH
Julia Zeitlinger
Submission date
Apr 15, 2022
Last update date
Sep 22, 2023
Contact name
Julia Zeitlinger
E-mail(s)
jbz@stowers.org
Organization name
Stowers Institute
Street address
1000 E 50th St
City
Kansas City
ZIP/Postal code
64110
Country
USA
Platforms (2)
GPL13304
Illumina HiSeq 2000 (Drosophila melanogaster)
GPL19132
Illumina NextSeq 500 (Drosophila melanogaster)
Samples (122)
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GSM6045681
ATAC-seq in wildtype INTACT Gut 14-17hrs embryo Rep1
GSM6045682
ATAC-seq in wildtype INTACT Gut 14-17hrs embryo Rep2
GSM6045683
ATAC-seq in wildtype INTACT Gut 14-17hrs embryo Rep3
GSM6045684
ATAC-seq in wildtype INTACT Epidermis 14-17hrs embryo Rep1
GSM6045685
ATAC-seq in wildtype INTACT Epidermis 14-17hrs embryo Rep2
GSM6045686
ATAC-seq in wildtype INTACT Muscle 14-17hrs embryo Rep1
GSM6045687
ATAC-seq in wildtype INTACT Muscle 14-17hrs embryo Rep2
GSM6045688
ATAC-seq in wildtype INTACT Neuron 14-17hrs embryo Rep1
GSM6045689
ATAC-seq in wildtype INTACT Neuron 14-17hrs embryo Rep2
GSM6045690
ATAC-seq in wildtype INTACT Trachea 14-17hrs embryo Rep1
GSM6045691
ATAC-seq in wildtype INTACT Trachea 14-17hrs embryo Rep2
GSM6045692
ATAC-seq in wildtype INTACT Trachea 14-17hrs embryo Rep3
GSM6045693
ATAC-seq in Lola-I mutant ORC4 Gut 14-17hrs embryo Rep1
GSM6045694
ATAC-seq in Lola-I mutant ORC4 Gut 14-17hrs embryo Rep2
GSM6045695
ATAC-seq in Lola-I mutant ORC4 Trachea 14-17hrs embryo Rep1
GSM6045696
ATAC-seq in Lola-I mutant ORC4 Trachea 14-17hrs embryo Rep2
GSM6045697
ATAC-seq in Lola-I mutant ORC4 14-17hrs embryo Rep1
GSM6045698
ATAC-seq in Lola-I mutant ORC4 14-17hrs embryo Rep2
GSM6045699
ATAC-seq in Lola-I mutant ORC4 17-20hrs embryo Rep1
GSM6045700
ATAC-seq in Lola-I mutant ORC4 17-20hrs embryo Rep2
GSM6045701
ATAC-seq in Lola-I rescue 14-17hrs embryo Rep1
GSM6045702
ATAC-seq in Lola-I rescue 14-17hrs embryo Rep2
GSM6045703
ATAC-seq in Lola-I mutant transheterozygous ORE50/ORC4 14-17hrs embryo Rep1
GSM6045704
ATAC-seq in Lola-I mutant transheterozygous ORE50/ORC4 14-17hrs embryo Rep2
GSM6045705
ATAC-seq in wildtype OregonR 14-17hrs embryo Rep1
GSM6045706
ATAC-seq in wildtype OregonR 14-17hrs embryo Rep2
GSM6045721
Epidermis_7021_INTACT_Lola_I_14-17h_1
GSM6045722
Epidermis_7021_INTACT_Lola_I_14-17h_2
GSM6045723
Epidermis_7021_INTACT_Lola_I_14-17h_3
GSM6045724
Epidermis_7021_INTACT_Rpb3_14-17h_1
GSM6045725
Epidermis_7021_INTACT_Rpb3_14-17h_2
GSM6045726
Epidermis_7021_INTACT_WCE_14-17h_1
GSM6045727
Epidermis_7021_INTACT_WCE_14-17h_2
GSM6045728
Glia_repo_INTACT_Rpb3_14-17h_1
GSM6045729
Glia_repo_INTACT_Rpb3_14-17h_2
GSM6045730
Glia_repo_INTACT_WCE_14-17h_1
GSM6045731
Glia_repo_INTACT_WCE_14-17h_2
GSM6045732
Gut_110394_INTACT_Lola_I_14-17h_1
GSM6045733
Gut_110394_INTACT_Lola_I_14-17h_2
GSM6045734
Gut_110394_INTACT_Rpb3_14-17h_1
GSM6045735
Gut_110394_INTACT_Rpb3_14-17h_2
GSM6045736
Gut_110394_INTACT_WCE_14-17h_1
GSM6045737
Gut_110394_INTACT_WCE_14-17h_2
GSM6045738
Muscle_mef2_INTACT_Lola_I_14-17h_1
GSM6045739
Muscle_mef2_INTACT_Lola_I_14-17h_2
GSM6045740
Muscle_mef2_INTACT_Lola_I_14-17h_3
GSM6045741
Muscle_mef2_INTACT_Rpb3_14-17h_1
GSM6045742
Muscle_mef2_INTACT_Rpb3_14-17h_2
GSM6045743
Muscle_mef2_INTACT_WCE_14-17h_1
GSM6045744
Muscle_mef2_INTACT_WCE_14-17h_2
GSM6045745
Neuron_elav_INTACT_Lola_I_14-17h_1
GSM6045746
Neuron_elav_INTACT_Lola_I_14-17h_2
GSM6045747
Neuron_elav_INTACT_Lola_I_14-17h_3
GSM6045748
Neuron_elav_INTACT_Rpb3_14-17h_1
GSM6045749
Neuron_elav_INTACT_Rpb3_14-17h_2
GSM6045750
Neuron_elav_INTACT_WCE_14-17h_1
GSM6045751
Neuron_elav_INTACT_WCE_14-17h_2
GSM6045752
Trachea_8807_INTACT_Lola_I_14-17h_1
GSM6045753
Trachea_8807_INTACT_Lola_I_14-17h_2
GSM6045754
Trachea_8807_INTACT_Rpb3_14-17h_1
GSM6045755
Trachea_8807_INTACT_Rpb3_14-17h_2
GSM6045756
Trachea_8807_INTACT_WCE_14-17h_1
GSM6045757
Trachea_8807_INTACT_WCE_14-17h_2
GSM6045758
Trachea_8807_orc4_INTACT_Rpb3_14-17h_1
GSM6045759
Dme_emb_14-17h_GAF_1
GSM6045760
Dme_emb_14-17h_GAF_2
GSM6045761
Dme_emb_14-17h_GAF_3
GSM6045762
Dme_emb_14-17h_Lola_I_1
GSM6045763
Dme_emb_14-17h_Lola_I_2
GSM6045764
Dme_emb_14-17h_Rpb3_1
GSM6045765
Dme_emb_14-17h_Rpb3_2
GSM6045766
Dme_emb_14-17h_Rpb3_3
GSM6045767
Dme_emb_14-17h_WCE_1
GSM6045768
Dme_emb_14-17h_WCE_2
GSM6045769
Dme_emb_14-17h_WCE_3
GSM6045770
Dme_emb_2-4h_GAF_1
GSM6045771
Dme_emb_2-4h_GAF_2
GSM6045772
Dme_emb_2-4h_GAF_3
GSM6045773
Dme_emb_2-4h_Rpb3_1
GSM6045774
Dme_emb_2-4h_Rpb3_2
GSM6045775
Dme_emb_2-4h_Rpb3_3
GSM6045776
Dme_emb_2-4h_WCE_1
GSM6045777
Dme_emb_2-4h_WCE_2
GSM6045778
Dme_emb_2-4h_WCE_3
GSM6045779
dme_emb_act_Lola_I_orc4_14-17h_Rpb3_1
GSM6045780
dme_emb_act_Lola_I_orc4_14-17h_Rpb3_2
GSM6045781
dme_emb_act_Lola_I_orc4_14-17h_WCE_1
GSM6045782
dme_emb_act_Lola_I_orc4_14-17h_WCE_2
GSM6045783
Dme_emb_orc4_14-17h_GAF_1
GSM6045784
Dme_emb_orc4_14-17h_GAF_2
GSM6045785
Dme_emb_orc4_14-17h_GAF_3
GSM6045786
Dme_emb_orc4_14-17h_Rpb3_1
GSM6045787
Dme_emb_orc4_14-17h_Rpb3_2
GSM6045788
Dme_emb_orc4_14-17h_Rpb3_3
GSM6045789
Dme_emb_orc4_14-17h_WCE_1
GSM6045790
Dme_emb_orc4_14-17h_WCE_2
GSM6045791
Dme_emb_orc4_14-17h_WCE_3
GSM6045792
Dme_MNase_14-17h_1
GSM6045793
Dme_MNase_14-17h_2
GSM6045794
Dme_MNase_2-4h_1
GSM6045795
Dme_MNase_orc4_14-17h_1
GSM6045796
Dme_MNase_orc4_14-17h_2
GSM6045809
mrna_wt_14to17h_1
GSM6045810
mrna_wt_14to17h_2
GSM6045811
mrna_wt_14to17h_3
GSM6045812
mrna_wt_14to17h_5
GSM6045813
mrna_wt_14to17h_6
GSM6045814
mrna_ORC4_14to17h_1
GSM6045815
mrna_ORC4_14to17h_2
GSM6045816
mrna_ORC4_14to17h_3
GSM6045817
mrna_ORC4_14to17h_4
GSM6045818
mrna_ORE50_ORC4_14to17h_1
GSM6045819
mrna_ORE50_ORC4_14to17h_2
GSM6045820
mrna_ORE50_ORC4_14to17h_3
GSM6045821
mrna_ORE50_ORC4_14to17h_4
GSM6045822
mrna_wt_2to4h_1
GSM6045823
mrna_wt_2to4h_2
GSM6045824
mrna_wt_2to4h_3
GSM6045825
single cell RNAseq in 14 to 14.5h wildtype OregonR embryos using 10x Rep1
GSM6045826
single cell RNAseq in 14 to 14.5h wildtype OregonR embryos using 10x Rep2
GSM6045827
single cell RNAseq in 14 to 14.5h Lola-I mutant ORC4 embryos using 10x Rep1
GSM6045828
single cell RNAseq in 14 to 14.5h Lola-I mutant ORC4 embryos using 10x Rep2
This SuperSeries is composed of the following SubSeries:
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More...
GSE200866
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development [ATAC-seq INTACT]
GSE200867
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development [ATAC-seq]
GSE200869
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development [ChIP-seq INTACT]
GSE200870
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development [ChIP-seq]
GSE200871
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development [MNase-seq]
GSE200873
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development [RNA-Seq]
GSE200874
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development [scRNA-Seq]
Relations
BioProject
PRJNA827110
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Format
SOFT formatted family file(s)
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TXT
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Download
File type/resource
GSE200875_RAW.tar
6.1 Gb
(http)
(custom)
TAR (of BED, BW, H5, TSV)
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