|
| Status |
Public on Nov 28, 2023 |
| Title |
Epithelial zonation along the mammalian small intestine defines five discrete metabolic domains [Mouse_scRNA-seq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Longitudinal zonation of epithelial cells across the mammalian small intestine defines five domains of nutrient absorption.
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| |
|
| Overall design |
Sorted epithelial cells and intestinal progenitor cells (intestinal stem cells and transit amplifying cells) were collected from 30 equal segments across the full length of 2 murine small intestines, barcoded using MULTIseq technology, pooled, and sequenced.
|
| Web link |
https://www.biorxiv.org/content/10.1101/2023.09.20.558726v1
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| |
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| Contributor(s) |
Zwick RK, Boffelli D, Klein OD |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA827827 |
| |
| Submission date |
Apr 29, 2022 |
| Last update date |
Jun 24, 2024 |
| Contact name |
Rachel Klapper Zwick |
| E-mail(s) |
Rachel.Zwick@ucsf.edu
|
| Organization name |
University of California, San Francisco
|
| Lab |
Ophir Klein Lab
|
| Street address |
513 Parnassus Ave.
|
| City |
San Francisco |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (2) |
| GSM6077219 |
Total intestinal epithelial cell sample (Mouse_scRNA-seq) |
| GSM6077220 |
Intestinal progenitor cell sample (Mouse_scRNA-seq) |
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| This SubSeries is part of SuperSeries: |
| GSE201859 |
Epithelial zonation along the mammalian small intestine defines five discrete metabolic domains |
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