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Series GSE202085 Query DataSets for GSE202085
Status Public on Nov 01, 2022
Title IRX5 promotes DNA damage repair and activation of hair follicle stem cells [ATAC-Seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Here, we identify the transcription factor IRX5 as a promoter of HFSC activation. Irx5-/- mice display delayed onset of first postnatal anagen, with increased DNA damage and diminished HFSC proliferation. Through transcriptomic and epigenetic analysis, we discover the formation of open chromatin regions near key cell cycle progression- and DNA damage repair genes in Irx5-/- HFSC. We also identify DNA damage repair factors BRCA1 and BARD1 as IRX5 downstream targets. Inhibition of FGF18 kinase signaling partially rescues the anagen delay in Irx5-/- mice, indicating that the Irx5-/- HFSC quiescent phenotype is in part due to failure to suppress Fgf18 expression. Our findings identify IRX5 as a required promoter of DNA damage repair in HFSC activation and hair cycle initiation.
Overall design HFSC (Ly-6A/E- CD34+ CD45f+) were FACS sorted and lysed. Nuclei were incubated in 50uL of Tn5 transposition buffer for 30mins at 37C. DNA isolation was preformed with Qiagen MinElute Cleanup kit. Library preparation with Illumina TrueSeq library preparation kit and paired end Illumina HiSeq 2500 sequencing (80million reads per sample) was performed at the University of California, Irvine High Throughput Genomics Facility.
Contributor(s) Jefferson C, Bogi A
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Submission date May 03, 2022
Last update date Nov 01, 2022
Contact name Jefferson K Chen
Organization name UC Irvine
Street address UC Irvine
City Irvine
ZIP/Postal code 92617
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (4)
GSM6094263 Irx5KO_rep1 [ATAC-Seq]
GSM6094264 WT_rep1 [ATAC-Seq]
GSM6094265 Irx5KO_rep2 [ATAC-Seq]
This SubSeries is part of SuperSeries:
GSE202076 IRX5 promotes DNA damage repair and activation of hair follicle stem cells
BioProject PRJNA834635

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Supplementary file Size Download File type/resource
GSE202085_p1_p3.bed.gz 6.7 Mb (ftp)(http) BED
GSE202085_p2_p4.bed.gz 6.8 Mb (ftp)(http) BED
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