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GEO accession:
Series GSE202967
Query DataSets for GSE202967
Status
Public on Dec 07, 2022
Title
A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection.
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36918693
Submission date
May 13, 2022
Last update date
Jul 14, 2023
Contact name
Shuibing Chen
E-mail(s)
shuibing.chen@gmail.com
Phone
2127465431
Organization name
Weill Cornell Medical College
Department
Surgery
Street address
A 827B, 1300 York Ave
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platforms (1)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (84)
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More...
GSM6139273
Airway 48h Mock_1 [bulk RNA-seq]
GSM6139274
Airway 48h Mock_2 [bulk RNA-seq]
GSM6139275
Airway 48h Mock_3 [bulk RNA-seq]
GSM6139276
Airway 48h MOI=0.01_1 [bulk RNA-seq]
GSM6139277
Airway 48h MOI=0.01_2 [bulk RNA-seq]
GSM6139278
Airway 48h MOI=0.01_3 [bulk RNA-seq]
GSM6139279
Airway 48h MOI=0.1_1 [bulk RNA-seq]
GSM6139280
Airway 48h MOI=0.1_2 [bulk RNA-seq]
GSM6139281
Airway 48h MOI=0.1_3 [bulk RNA-seq]
GSM6139282
Airway 48h MOI=1_1 [bulk RNA-seq]
GSM6139283
Airway 48h MOI=1_2 [bulk RNA-seq]
GSM6139284
Airway 48h MOI=1_3 [bulk RNA-seq]
GSM6139285
Alveoar 48h Mock_1 [bulk RNA-seq]
GSM6139286
Alveolar 48h Mock_2 [bulk RNA-seq]
GSM6139287
Alveolar 48h Mock_3 [bulk RNA-seq]
GSM6139288
Alveolar 48h MOI=0.01_1 [bulk RNA-seq]
GSM6139289
Alveolar 48h MOI=0.01_2 [bulk RNA-seq]
GSM6139290
Alveolar 48h MOI=0.01_3 [bulk RNA-seq]
GSM6139291
Alveolar 48h MOI=0.1_1 [bulk RNA-seq]
GSM6139292
Alveolar 48h MOI=0.1_2 [bulk RNA-seq]
GSM6139293
Alveolar 48h MOI=0.1_3 [bulk RNA-seq]
GSM6139294
Alveolar 48h MOI=1_1 [bulk RNA-seq]
GSM6139295
Alveolar 48h MOI=1_2 [bulk RNA-seq]
GSM6139296
Alveolar 48h MOI=1_3 [bulk RNA-seq]
GSM6139297
Cardiomyocyte 48h Mock_1 [bulk RNA-seq]
GSM6139298
Cardiomyocyte 48h Mock_2 [bulk RNA-seq]
GSM6139299
Cardiomyocyte 48h MOI=0.01_1 [bulk RNA-seq]
GSM6139300
Cardiomyocyte 48h MOI=0.01_2 [bulk RNA-seq]
GSM6139301
Cardiomyocyte 48h MOI=0.01_3 [bulk RNA-seq]
GSM6139302
Cardiomyocyte 48h MOI=0.1_1 [bulk RNA-seq]
GSM6139303
Cardiomyocyte 48h MOI=0.1_2 [bulk RNA-seq]
GSM6139304
Cardiomyocyte 48h MOI=0.1_3 [bulk RNA-seq]
GSM6139305
Cardiomyocyte 48h MOI=1_1 [bulk RNA-seq]
GSM6139306
Cardiomyocyte 48h MOI=1_2 [bulk RNA-seq]
GSM6139307
Cardiomyocyte 48h MOI=1_3 [bulk RNA-seq]
GSM6139308
Airway WT Mock_1 [bulk RNA-seq]
GSM6139309
Airway WT Mock_2 [bulk RNA-seq]
GSM6139310
Airway WT Mock_3 [bulk RNA-seq]
GSM6139311
Airway CIART-/- Mock_1 [bulk RNA-seq]
GSM6139312
Airway CIART-/- Mock_2 [bulk RNA-seq]
GSM6139313
Airway CIART-/- Mock_3 [bulk RNA-seq]
GSM6139314
Alveolar WT Mock_1 [bulk RNA-seq]
GSM6139315
Alveolar WT Mock_2 [bulk RNA-seq]
GSM6139316
Alveolar WT Mock_3 [bulk RNA-seq]
GSM6139317
Alveolar CIART-/- Mock_1 [bulk RNA-seq]
GSM6139318
Alveolar CIART-/- Mock_2 [bulk RNA-seq]
GSM6139319
Alveolar CIART-/- Mock_3 [bulk RNA-seq]
GSM6139320
Cardiomyocyte WT Mock_1 [bulk RNA-seq]
GSM6139321
Cardiomyocyte WT Mock_2 [bulk RNA-seq]
GSM6139322
Cardiomyocyte WT Mock_3 [bulk RNA-seq]
GSM6139323
Cardiomyocyte CIART-/- Mock_1 [bulk RNA-seq]
GSM6139324
Cardiomyocyte CIART-/- Mock_2 [bulk RNA-seq]
GSM6139325
Cardiomyocyte CIART-/- Mock_3 [bulk RNA-seq]
GSM6139326
Airway WT MOI0.1_1 [bulk RNA-seq]
GSM6139327
Airway WT MOI0.1_2 [bulk RNA-seq]
GSM6139328
Airway WT MOI0.1_3 [bulk RNA-seq]
GSM6139329
Airway CIART-/- MOI0.1_1 [bulk RNA-seq]
GSM6139330
Airway CIART-/- MOI0.1_2 [bulk RNA-seq]
GSM6139331
Airway CIART-/- MOI0.1_3 [bulk RNA-seq]
GSM6139332
Alveolar WT MOI0.1_1 [bulk RNA-seq]
GSM6139333
Alveolar WT MOI0.1_2 [bulk RNA-seq]
GSM6139334
Alveolar WT MOI0.1_3 [bulk RNA-seq]
GSM6139335
Alveolar CIART-/- MOI0.1_1 [bulk RNA-seq]
GSM6139336
Alveolar CIART-/- MOI0.1_2 [bulk RNA-seq]
GSM6139337
Alveolar CIART-/- MOI0.1_3 [bulk RNA-seq]
GSM6139338
Cardiomyocyte WT MOI0.3_1 [bulk RNA-seq]
GSM6139339
Cardiomyocyte WT MOI0.3_2 [bulk RNA-seq]
GSM6139340
Cardiomyocyte WT MOI0.3_3 [bulk RNA-seq]
GSM6139341
Cardiomyocyte CIART-/- MOI0.3_1 [bulk RNA-seq]
GSM6139342
Cardiomyocyte CIART-/- MOI0.3_2 [bulk RNA-seq]
GSM6139343
Cardiomyocyte CIART-/- MOI0.3_3 [bulk RNA-seq]
GSM6139344
CIART-/-_Mock [scRNA-seq]
GSM6139345
CIART-/-_SARS-CoV-2 [scRNA-seq]
GSM6139346
WT_Mock [scRNA-seq]
GSM6139347
WT_SARS-CoV-2 [scRNA-seq]
GSM6139348
CM_WT_1 [ATAC-seq]
GSM6139349
CM_WT_2 [ATAC-seq]
GSM6139350
CM_WT_3 [ATAC-seq]
GSM6139351
CM_CIART-/-_1 [ATAC-seq]
GSM6139352
CM_CIART-/-_2 [ATAC-seq]
GSM6139353
CM_CIART-/-_3 [ATAC-seq]
GSM6139354
IgG Control [CUT&RUN]
GSM6139355
WT_1 [CUT&RUN]
GSM6139356
WT_2 [CUT&RUN]
This SuperSeries is composed of the following SubSeries:
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More...
GSE202963
A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection [bulk RNA-seq]
GSE202964
A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection [scRNA-seq]
GSE202965
A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection [ATAC-seq]
GSE202966
A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection [CUT&RUN]
Relations
BioProject
PRJNA837892
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE202967_RAW.tar
1.9 Gb
(http)
(custom)
TAR (of BW, MTX, NARROWPEAK, TSV)
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