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GEO accession:
Series GSE203593
Query DataSets for GSE203593
Status
Public on May 26, 2022
Title
Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence
Organisms
Homo sapiens
;
Mus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35750052
Submission date
May 23, 2022
Last update date
Aug 25, 2022
Contact name
Julia Belk
Organization name
Stanford University
Street address
450 Serra Mall
City
Stanford
State/province
California
ZIP/Postal code
94305
Country
USA
Platforms (2)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL31136
Illumina NovaSeq 6000 (Mus)
Samples (58)
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GSM6176572
in vitro TEX day 0 replicate 1
GSM6176573
in vitro TEX day 0 replicate 2
GSM6176574
in vitro TEX day 0 replicate 3
GSM6176575
in vitro TEX day 2 replicate 1
GSM6176576
in vitro TEX day 2 replicate 2
GSM6176577
in vitro TEX day 2 replicate 3
GSM6176578
in vitro TEX day 4 replicate 1
GSM6176579
in vitro TEX day 4 replicate 2
GSM6176580
in vitro TEX day 4 replicate 3
GSM6176581
in vitro TEX day 6 replicate 1
GSM6176582
in vitro TEX day 6 replicate 2
GSM6176583
in vitro TEX day 6 replicate 3
GSM6176584
in vitro TEX day 8 replicate 1
GSM6176585
in vitro TEX day 8 replicate 2
GSM6176586
in vitro TEX day 8 replicate 3
GSM6176587
in vitro TEX day 10 replicate 1
GSM6176588
in vitro TEX day 10 replicate 2
GSM6176589
in vitro TEX day 10 replicate 3
GSM6176590
in vitro TEX day 6 CTRL1 replicate 1
GSM6176591
in vitro TEX day 6 Arid1a-sgRNA replicate 1
GSM6176592
in vitro TEX day 6 CTRL1 replicate 2
GSM6176593
in vitro TEX day 6 Arid1a-sgRNA replicate 2
GSM6176594
in vitro TEX day 6 CTRL1 replicate 3
GSM6176595
in vitro TEX day 6 Arid1a-sgRNA replicate 3
GSM6176596
in vitro TEX day 6 CTRL1 replicate 4
GSM6176597
in vitro TEX day 6 Arid1a-sgRNA replicate 4
GSM6176598
in vitro TEX day 10 Arid1a-sgRNA replicate 1
GSM6176599
in vitro TEX day 10 CTRL1 replicate 2
GSM6176600
in vitro TEX day 10 Arid1a-sgRNA replicate 2
GSM6176601
in vitro TEX day 10 CTRL1 replicate 3
GSM6176602
in vitro TEX day 10 Arid1a-sgRNA replicate 3
GSM6176603
in vitro TEX day 10 CTRL1 replicate 4
GSM6176604
in vitro TEX day 10 Arid1a-sgRNA replicate 4
GSM6176605
human TEX AAVS sg1 donor 3
GSM6176606
human TEX AAVS sg1 donor 5
GSM6176607
human TEX AAVS sg1 donor 7
GSM6176608
human TEX ARID1A sg58 donor 3
GSM6176609
human TEX ARID1A sg58 donor 5
GSM6176610
human TEX ARID1A sg58 donor 7
GSM6176611
human TEX ARID1A sg60 donor 3
GSM6176612
human TEX ARID1A sg60 donor 5
GSM6176613
human TEX ARID1A sg60 donor 7
GSM6176614
Expt 1 M1 GEX
GSM6176615
Expt 1 M1 sgRNAs
GSM6176616
Expt 1 M2 GEX Capture 1
GSM6176617
Expt 1 M2 sgRNAs Capture 1
GSM6176618
Expt 1 M2 GEX Capture 2
GSM6176619
Expt 1 M2 sgRNAs Capture 2
GSM6176620
Expt 1 M3 GEX
GSM6176621
Expt 1 M3 sgRNAs
GSM6176622
Expt 2 M1 left tumor GEX
GSM6176623
Expt 2 M1 left tumor sgRNAs
GSM6176624
Expt 2 M1 right tumor GEX
GSM6176625
Expt 2 M1 right tumor sgRNAs
GSM6176626
Expt 2 M2 left tumor GEX
GSM6176627
Expt 2 M2 left tumor sgRNAs
GSM6176628
Expt 2 M2 right tumor GEX
GSM6176629
Expt 2 M2 right tumor sgRNAs
This SuperSeries is composed of the following SubSeries:
GSE203591
Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence [ATAC-seq]
GSE203592
Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence [Perturb-seq]
Relations
BioProject
PRJNA841506
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Supplementary file
Size
Download
File type/resource
GSE203593_RAW.tar
7.1 Gb
(http)
(custom)
TAR (of BW)
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