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Series GSE205078 Query DataSets for GSE205078
Status Public on Jun 12, 2023
Title Inflammatory blood neutrophils in COPD are derived from activated bone marrow progenitors
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Chronic obstructive pulmonary disease (COPD) is a major respiratory disease characterized by small airway inflammation, emphysema and severe breathing difficulties. Low-grade systemic inflammation is an established hallmark of severe disease, however, the molecular changes in peripheral immune cells remain far from understood. We combined multi-color flow cytometry with single-cell RNA sequencing and showed that blood neutrophil numbers are significantly increased in COPD and they are a heterogeneous population. A transcriptomic state that expressed interferon response genes correlated with alveolar damage and acute exacerbations. Furthermore, bronchoalveolar neutrophils expressed gene signatures corresponding to certain blood neutrophil states. Last, our data in a murine model of cigarette smoke exposure demonstrated that bone marrow neutrophil progenitors are expanded in smoke-treated animals and display signs of immune activation. Our study provides evidence that COPD systemic inflammation may derive from an activated haematopoietic precursor compartment.
 
Overall design Seven- to eight-week-old female BALB/c mice were exposed to normal air or cigarette smoke for 3 months. Live bronchoalveolar, CD45+ whole blood and CD45+ bone marrow cells were collected and sorted. For each compartment, cells from all animals per group were pooled together and sequenced.
 
Contributor(s) Kapellos TS, Ulas T, Becker M, Hansbro PM, Schulze JL
Citation(s) 37243592
Submission date May 30, 2022
Last update date Jun 14, 2023
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM6204897 Bronchoalveolar air [Collection_E7]
GSM6204898 Bronchoalveolar smoke [Collection_E8]
GSM6204899 Bone marrow air [Collection_E9]
Relations
BioProject PRJNA843686

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE205078_RAW.tar 122.5 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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