|
| Status |
Public on Feb 25, 2011 |
| Title |
Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish |
| Organism |
Danio rerio |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
In this study, we have applied ChIP-Seq to identify putative regulatory elements throughout the zebrafish genome. For this purpose we identified sequences within the zebrafish genome that associate with H3K4me1 and H3K4me3, which are epigenetic modifications known to be associated with active cis-regulatory elements in other species.
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| |
|
| Overall design |
Determination of H3K4me1- and H3K4me3-binding sites in the zebrafish genome.
|
| |
|
| Contributor(s) |
Aday AW, Zhu LJ, Lawson ND, Lakshmanan A |
| Citation(s) |
21435340 |
| |
| Submission date |
Mar 02, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Lihua Julie Zhu |
| Organization name |
Umass Medial School
|
| Department |
Program in Gene Function and Expression
|
| Street address |
364 Plantation St
|
| City |
Worcester |
| State/province |
MA |
| ZIP/Postal code |
01605 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL10164 |
Illumina Genome Analyzer (Danio rerio) |
|
| Samples (6)
|
|
| Relations |
| SRA |
SRP002130 |
| BioProject |
PRJNA124889 |
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