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| Status |
Public on Jul 01, 2024 |
| Title |
Vitamin D receptor (VDR) ChIP-Seq on human colonic organoids stimulated with 1,25(OH)2D3 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Genome-wide VDR chromatin binding sites in colonic organoids stimulated with 1,25(OH)2D3 for 2h.
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| Overall design |
Colonic organoids derived from a healthy control individual were stimulated with 1,25(OH)2D3 or vehicle (ethanol) for 2h. Two independent ChIP seq experiments (ChIP A and B) were preformed with organoids from the same donor.
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| Contributor(s) |
Kellermann L |
| Citation(s) |
38747639 |
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| Submission date |
Jun 15, 2022 |
| Last update date |
Aug 16, 2024 |
| Contact name |
Lauge Kellermann |
| Organization name |
Herlev Hospital
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| Department |
Department of Gastroenterology
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| Street address |
Borgmester Ib Juuls Vej 1
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| City |
Herlev |
| State/province |
--- Select --- |
| ZIP/Postal code |
2730 |
| Country |
Denmark |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (8)
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| GSM6245582 |
Colonic organoid, ChipA, input, vehicle |
| GSM6245583 |
Colonic organoid, ChipA, sample, vehicle |
| GSM6245584 |
Colonic organoid, ChipB, input, vehicle |
| GSM6245585 |
Colonic organoid, ChipB, sample, vehicle |
| GSM6245586 |
Colonic organoid, ChipA, input, vitD |
| GSM6245587 |
Colonic organoid, ChipA, sample, vitD |
| GSM6245588 |
Colonic organoid, ChipB, input, vitD |
| GSM6245589 |
Colonic organoid, ChipB, sample, vitD |
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| This SubSeries is part of SuperSeries: |
| GSE206228 |
Identification of VDR target genes in intestinal epithelial cells |
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| Relations |
| BioProject |
PRJNA849561 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE206176_RAW.tar |
1.5 Gb |
(http)(custom) |
TAR (of BW) |
| GSE206176_macs2_bdgdiff_VA_vs_EA_c3.0_cond1.bed.gz |
2.6 Kb |
(ftp)(http) |
BED |
| GSE206176_macs2_bdgdiff_VB_vs_EB_c3.0_cond1.bed.gz |
4.3 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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