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Series GSE206189 Query DataSets for GSE206189
Status Public on Mar 01, 2023
Title Altered expression of SELF-PRUNING disrupts meristem homeostasis and facilitates delivery of signals to the meristem
Organism Gossypium hirsutum
Experiment type Expression profiling by high throughput sequencing
Summary Meristem maintenance, achieved through the highly conserved CLAVATA-WUSCHEL (CLV-WUS) regulatory circuit, is fundamental in balancing stem cell proliferation with cellular differentiation. Disruptions to meristem homeostasis can alter meristem size, leading to enlarged organs. Cotton, the world’s most important fiber crop, shows inherent variation in fruit size. Leveraging meristem regulation could benefit cotton agriculture and increase yields of high-quality fibers. Using virus-based gene manipulation in cotton, we altered expression of genes functioning in the CLV-WUS circuit to perturb meristem regulation and increase fruit size. Targeted alteration of individual components of the CLV-WUS circuit only modestly fasciated flowers and fruits. Unexpectedly, controlled expression of meristem regulator SELF-PRUNING (SP) dramatically increased the impacts of altered CLV-WUS expression on flower and fruit fasciation. Meristem transcriptomics show SP and genes of the CLV-WUS circuit are expressed independently from each other, suggesting these gene products are not acting in the same path. Virus-induced silencing of GhSP facilitated delivery of other signals to the meristem to dramatically alter organ specification. SELF-PRUNING has a role in cotton meristem homeostasis, and changes in GhSP expression increased access of virus-based signals to the meristem.
 
Overall design Comparative gene expression profiling of meristems isolated from cotton (Gossypium hirsutum) Coker 312 plants infected with viruses targeting genes of the CLAVATA-WUSCHEL meristem maintenance circuit.
 
Contributor(s) McGarry RC, Ayre BG, Kaur H, Lin Y, Lopez Puc G, Eshed Williams L, van der Knaap E
Citation(s) 36852887
Submission date Jun 15, 2022
Last update date Jul 24, 2023
Contact name Roisin C McGarry
Organization name University of North Texas
Department Dept. of Biological Sciences, BioDiscovery Institute
Street address 1511 West Sycamore
City Denton
State/province TX
ZIP/Postal code 76201
Country USA
 
Platforms (1)
GPL32355 NextSeq 550 (Gossypium hirsutum)
Samples (18)
GSM6245817 TRV biol rep1
GSM6245818 TRV biol rep2
GSM6245819 TRV:GhSP biol rep1
Relations
BioProject PRJNA849579

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE206189_cds.fpkm_tracking.fpkm_tracking.gz 7.1 Mb (ftp)(http) FPKM_TRACKING
GSE206189_transcripts.sorted_by_expression.sig.txt.gz 246.2 Kb (ftp)(http) TXT
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Processed data are available on Series record

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