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| Status |
Public on Jan 15, 2023 |
| Title |
Single-cell ATAC profiles of the somites and myotomes at embryonic stages E18, E21, and E28 from Tibetan pigs (ZZ) and Duroc x Tibetan pigs (DZ) |
| Organism |
Sus scrofa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To investigate the upstream regulatory networks in myogenesis that lead to the establishment of the myogenic lineage and subsequent differentiation, we proformed scATAC-seq of pig somite and myotome cells from Tibetan pigs (ZZ) and Duroc×Tibetan pigs (DZ) at several embryonic stages (E18, E21, and E28).
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| Overall design |
Somite tissues [a mixture of embryos (n=5) from the same sow] of ZZ and DZ at E18, E21, and myotome tissues [a mixture of embryos (n=5) from the same sow] at E28 were isolated, and the tissues were digested with collagenase for single-cell RNA sequencing.
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| Contributor(s) |
Mo D, Cai S, Wang X |
| Citation(s) |
36726129 |
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| Submission date |
Jun 24, 2022 |
| Last update date |
Feb 10, 2023 |
| Contact name |
Delin Mo |
| E-mail(s) |
wangxy635@mail2.sysu.edu.cn
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| Organization name |
Sun Yat-sen University
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| Street address |
Xingang Road
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| City |
Guangzhou |
| ZIP/Postal code |
510006 |
| Country |
China |
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| Platforms (1) |
| GPL26351 |
Illumina NovaSeq 6000 (Sus scrofa) |
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| Samples (6)
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| This SubSeries is part of SuperSeries: |
| GSE206914 |
Somites and myotomes at embryonic stages E18, E21, and E28 from Tibetan pigs (ZZ) and Duroc x Tibetan pigs (DZ) |
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| Relations |
| BioProject |
PRJNA852595 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE206913_RAW.tar |
974.6 Mb |
(http)(custom) |
TAR (of BED, MTX, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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