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| Status |
Public on Nov 29, 2023 |
| Title |
Wheat stem rust interaction |
| Organism |
Triticum aestivum |
| Experiment type |
Expression profiling by array
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| Summary |
Stem rust of wheat is a deleterious fungal disease across the globe causing severe yield losses. Although, many stem rust resistance genes (Sr) are being used in wheat breeding programs, new emerging stem rust pathotypes are a challenge to important Sr genes. In recent years, multiple studies on leaf and yellow rust molecular mechanism have been done, however, for stem rust such studies are lacking. Current study investigated stem rust induced response in the susceptible wheat genotype C306 and its Near Isogenic Line (NIL) for Sr24 gene, HW2004, using microarray analysis to understand the transcriptomic differences at different stages of infection. Results showed that HW2004 has higher basal levels of several important genes involved in pathogen detection, defence, and display early activation of multiple defence mechanisms. Further Gene Ontology (GO) and pathway analysis identified important genes responsible for pathogen detection, downstream signalling cascades and transcription factors (TFs) involved in activation and mediation of defence responses. Results suggest that generation of Reactive Oxygen Species (ROS), cytoskeletal rearrangement, activation of multiple hydrolases, and lipid metabolism mediated biosynthesis of certain secondary metabolites are collectively involved in Sr24-mediated defence in HW2004, in response to stem rust infection. Novel and unannotated, but highly responsive genes were also identified, which may also contribute towards resistance phenotype. Furthermore, certain DEGs also mapped close to the Sr24-linked marker on Thinopyrum elongatum translocated fragment on wheat 3E chromosome, which advocate further investigations for better insights of the Sr24-mediated stem rust resistance.
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| Overall design |
Microarray data of NIL (near-isogenic line) for resistance gene Sr24 in wheat upon infection with stem rust race at three time points
Agilent Wheat 4x44k Microarray: AMADID: 022297
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| Contributor(s) |
Das BK |
| Citation(s) |
38079439 |
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| Submission date |
Jun 29, 2022 |
| Last update date |
Jan 25, 2024 |
| Contact name |
Genotypic technology |
| E-mail(s) |
sudha.rao@genotypic.co.in
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| Organization name |
Genotypic Technology
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| Street address |
259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE
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| City |
Bangalore |
| State/province |
Karnataka |
| ZIP/Postal code |
560094 |
| Country |
India |
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| Platforms (1) |
| GPL13636 |
Agilent-022297 Wheat Gene Expression Microarray (Probe Name version) |
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| Samples (12)
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| GSM6280824 |
leaf, 0 hpi, resistant, rep2 |
| GSM6280825 |
leaf, 10 hpi, susceptible, rep1 |
| GSM6280826 |
leaf, 10 hpi, susceptible, rep2 |
| GSM6280827 |
leaf, 10 hpi, resistant, rep1 |
| GSM6280828 |
leaf, 10 hpi, resistant, rep2 |
| GSM6280829 |
leaf, 72 hpi, susceptible, rep1 |
| GSM6280830 |
leaf, 72 hpi, susceptible, rep2 |
| GSM6280831 |
leaf, 72 hpi, resistant, rep1 |
| GSM6280832 |
leaf, 72 hpi, resistant, rep2 |
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| Relations |
| BioProject |
PRJNA854072 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE207175_RAW.tar |
93.0 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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